Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2249033..2249301 | Replicon | chromosome |
| Accession | NZ_HG994850 | ||
| Organism | Escherichia coli isolate 127 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2249161..2249263 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2249033..2249301 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLO83_RS10510 | 2245585..2246247 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LLO83_RS10515 | 2246271..2246927 | - | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LLO83_RS10520 | 2247030..2247260 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LLO83_RS10525 | 2247399..2247773 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LLO83_RS10530 | 2247777..2248649 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| LLO83_RS10535 | 2248662..2249003 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2249033..2249301 | - | 269 | - | - | Antitoxin |
| - | 2249161..2249263 | + | 103 | - | - | Toxin |
| LLO83_RS10540 | 2249398..2250054 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| LLO83_RS10545 | 2250055..2250246 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LLO83_RS10550 | 2250351..2250587 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LLO83_RS10555 | 2250705..2252144 | - | 1440 | WP_001298454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T285290 NZ_HG994850:2249161-2249263 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT285290 NZ_HG994850:c2249301-2249033 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
