Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/Phd(antitoxin)
Location 74016..74560 Replicon chromosome
Accession NZ_HG992338
Organism Xanthomonas arboricola pv. corylina strain 301 isolate 301

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag P3C56_RS00270 Protein ID WP_228960823.1
Coordinates 74291..74560 (+) Length 90 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A2N7V9L6
Locus tag P3C56_RS00265 Protein ID WP_016902922.1
Coordinates 74016..74273 (+) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
P3C56_RS00250 (XAC301_00490) 69124..70632 - 1509 WP_275548237.1 ribonuclease H-like domain-containing protein -
P3C56_RS00255 (XAC301_00500) 70629..73124 - 2496 WP_016904859.1 DEAD/DEAH box helicase -
P3C56_RS00260 (XAC301_00510) 73298..73960 + 663 WP_039511099.1 hemolysin III family protein -
P3C56_RS00265 (XAC301_00520) 74016..74273 + 258 WP_016902922.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
P3C56_RS00270 (XAC301_00530) 74291..74560 + 270 WP_228960823.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
P3C56_RS00275 (XAC301_00540) 74679..75200 - 522 WP_016902924.1 hypothetical protein -
P3C56_RS00280 (XAC301_00550) 75370..75723 - 354 WP_016902925.1 helix-turn-helix domain-containing protein -
P3C56_RS00285 (XAC301_00560) 75746..75964 + 219 WP_230673957.1 YciI family protein -
P3C56_RS00290 (XAC301_00570) 76124..77215 - 1092 WP_275548498.1 ATP-grasp fold amidoligase family protein -
P3C56_RS00295 (XAC301_00580) 77672..78385 + 714 WP_053046149.1 hypothetical protein -
P3C56_RS00300 (XAC301_00590) 78396..79289 - 894 WP_275548238.1 LysR family transcriptional regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-80)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10221.75 Da        Isoelectric Point: 10.1539

>T285260 WP_228960823.1 NZ_HG992338:74291-74560 [Xanthomonas arboricola pv. corylina]
VADLDAIADYIALEDAAAAAALVRRVFAHVEQLAEHPESGSRPQELKRSRYRQIVEPPCRVFYRVDGQRVVVVHVMRSER
LLRKNRLSR

Download         Length: 270 bp

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9704.23 Da        Isoelectric Point: 8.6056

>AT285260 WP_016902922.1 NZ_HG992338:74016-74273 [Xanthomonas arboricola pv. corylina]
MRTELVTTLKRQATELLADVERDKEPILITQHGLPSAYLVDVASYERMQQRMAILEGIARGEMAVAEGRSLSHEQAKQRL
ARWLK

Download         Length: 258 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A0A2N7V9L6

References