Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) paaR-paaA-parE/RelE(toxin)
Location 2113762..2114240 Replicon chromosome
Accession NZ_HG969192
Organism Bartonella tribocorum strain BM1374166

Toxin (Protein)


Gene name parE_1 Uniprot ID -
Locus tag BM1374166_RS09195 Protein ID WP_038473997.1
Coordinates 2113953..2114240 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name paaA Uniprot ID -
Locus tag BM1374166_RS09190 Protein ID WP_038473994.1
Coordinates 2113762..2113953 (+) Length 64 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BM1374166_RS12925 2110380..2110550 - 171 WP_158305295.1 hypothetical protein -
BM1374166_RS12930 2110817..2110981 - 165 WP_158305296.1 hypothetical protein -
BM1374166_RS12935 2111064..2111222 - 159 WP_158305297.1 hypothetical protein -
BM1374166_RS09180 2112007..2112222 - 216 WP_038473992.1 hypothetical protein -
BM1374166_RS09185 2113024..2113431 + 408 WP_012232283.1 helix-turn-helix domain-containing protein -
BM1374166_RS09190 2113762..2113953 + 192 WP_038473994.1 hypothetical protein Antitoxin
BM1374166_RS09195 2113953..2114240 + 288 WP_038473997.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
BM1374166_RS09200 2114730..2115122 - 393 WP_038474003.1 hypothetical protein -
BM1374166_RS09215 2116458..2116879 + 422 Protein_1731 helix-turn-helix transcriptional regulator -
BM1374166_RS09220 2116961..2117359 - 399 WP_012232286.1 type II toxin-antitoxin system VapC family toxin -
BM1374166_RS09225 2117356..2117607 - 252 WP_005774741.1 DNA-binding protein -
BM1374166_RS09230 2118380..2118769 + 390 WP_012232287.1 helix-turn-helix domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-91)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11073.07 Da        Isoelectric Point: 9.9304

>T285255 WP_038473997.1 NZ_HG969192:2113953-2114240 [Bartonella tribocorum]
MLPIIWLACARDDLNKILTYIAYESPPAARRMKRLLEDSVLPLAEHPYLYRQSEKVPGLREVLAHPNYLILYRVTKTQIE
ITSVVHARRKFPIST

Download         Length: 288 bp

Antitoxin


Download         Length: 64 a.a.        Molecular weight: 7274.21 Da        Isoelectric Point: 4.3210

>AT285255 WP_038473994.1 NZ_HG969192:2113762-2113953 [Bartonella tribocorum]
MKTVLSPLISEFETVEEETDYTAWLREKVRVSLANPHPTISHDEVMAEMDNIIDQIEAEKKKS

Download         Length: 192 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References