Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1976274..1976542 | Replicon | chromosome |
| Accession | NZ_HG941718 | ||
| Organism | Escherichia coli O25b:H4-ST131 strain EC958 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1976312..1976414 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1976274..1976542 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EC958_RS10070 | 1973432..1974871 | + | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EC958_RS10075 | 1974988..1975224 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EC958_RS10080 | 1975329..1975520 | + | 192 | WP_001296140.1 | YebW family protein | - |
| EC958_RS10085 | 1975521..1976177 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| - | 1976274..1976542 | + | 269 | - | - | Antitoxin |
| - | 1976312..1976414 | - | 103 | - | - | Toxin |
| EC958_RS10095 | 1976572..1976913 | - | 342 | WP_000976472.1 | YebY family protein | - |
| EC958_RS10100 | 1976926..1977798 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| EC958_RS10105 | 1977802..1978176 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EC958_RS10110 | 1978315..1978545 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EC958_RS10115 | 1978647..1979303 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| EC958_RS10120 | 1979327..1979989 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T285194 NZ_HG941718:c1976414-1976312 [Escherichia coli O25b:H4-ST131]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT285194 NZ_HG941718:1976274-1976542 [Escherichia coli O25b:H4-ST131]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
