285164

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) /BrnT(toxin)
Location 2517931..2518423 Replicon chromosome
Accession NZ_HG938355
Organism Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141

Toxin (Protein)


Gene name - Uniprot ID -
Locus tag RG1141_RS12665 Protein ID WP_038549463.1
Coordinates 2518154..2518423 (-) Length 90 a.a.

Antitoxin (Protein)


Gene name - Uniprot ID -
Locus tag RG1141_RS12660 Protein ID WP_197569336.1
Coordinates 2517931..2518173 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
RG1141_RS12640 2513105..2514058 + 954 WP_038549459.1 metallophosphoesterase -
RG1141_RS12645 2514157..2514636 + 480 WP_038544285.1 RNA polymerase sigma factor -
RG1141_RS12650 2514639..2515484 + 846 WP_038544288.1 anti-sigma factor -
RG1141_RS32050 2515596..2515733 + 138 WP_157885153.1 hypothetical protein -
RG1141_RS12655 2515883..2517604 - 1722 WP_038544291.1 2-isopropylmalate synthase -
RG1141_RS12660 2517931..2518173 - 243 WP_197569336.1 CopG family transcriptional regulator Antitoxin
RG1141_RS12665 2518154..2518423 - 270 WP_038549463.1 BrnT family toxin Toxin
RG1141_RS12670 2518462..2519640 - 1179 WP_038544293.1 benzoate/H(+) symporter BenE family transporter -
RG1141_RS12675 2519928..2520872 + 945 WP_051899774.1 sensor domain-containing diguanylate cyclase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Ribonuclease toxin, BrnT, of type II toxin-antitoxin system

(5-80)

Antitoxin

CopG antitoxin

(8-71)


Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10587.80 Da        Isoelectric Point: 8.4937

>T285164 WP_038549463.1 NZ_HG938355:c2518423-2518154 [Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI]
MKFEFDPDKSATNKDKHGIDFVEAQALWADERRTVAPVQSDTESRYILTGKIAEKHWTAVYTWRGDWLRIISVRRARDKE
KQTYEDNNR

Download         Length: 270 bp

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 9335.57 Da        Isoelectric Point: 6.3654

>AT285164 WP_197569336.1 NZ_HG938355:c2518173-2517931 [Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI]
MKTITAEEFDKKFDDGEDISEYVDWSKATRPGLEPKRVNIDFPTWVVNGLDQEARRLGVTRQSLVKLWIAERLEARRQGK

Download         Length: 243 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References