Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | vapBC/PIN_Sll0205-like-Phd |
Location | 3124612..3125216 | Replicon | chromosome |
Accession | NZ_HG813240 | ||
Organism | Mycobacterium tuberculosis 49-02 |
Toxin (Protein)
Gene name | vapC | Uniprot ID | P71623 |
Locus tag | MT49_RS14880 | Protein ID | WP_003414492.1 |
Coordinates | 3124612..3125004 (-) | Length | 131 a.a. |
Antitoxin (Protein)
Gene name | vapB | Uniprot ID | A0A829CBY8 |
Locus tag | MT49_RS14885 | Protein ID | WP_003414495.1 |
Coordinates | 3125001..3125216 (-) | Length | 72 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
MT49_RS14850 | 3119762..3120550 | - | 789 | WP_003917092.1 | CRISPR-associated endoribonuclease Cas6 | - |
MT49_RS14855 | 3120884..3121429 | - | 546 | WP_014584866.1 | DUF1802 family protein | - |
MT49_RS14860 | 3121701..3122585 | - | 885 | WP_003414409.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
MT49_RS14865 | 3122588..3123475 | - | 888 | WP_003414414.1 | type IV toxin-antitoxin system AbiEi family antitoxin | - |
MT49_RS14870 | 3123780..3124325 | - | 546 | WP_003910939.1 | DUF1802 family protein | - |
MT49_RS14875 | 3124322..3124591 | - | 270 | WP_003414489.1 | DUF2277 family protein | - |
MT49_RS14880 | 3124612..3125004 | - | 393 | WP_003414492.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
MT49_RS14885 | 3125001..3125216 | - | 216 | WP_003414495.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
MT49_RS14890 | 3125263..3126012 | + | 750 | WP_003902358.1 | enoyl-CoA hydratase | - |
MT49_RS14895 | 3126091..3127173 | - | 1083 | WP_003414499.1 | ABC transporter ATP-binding protein | - |
MT49_RS14900 | 3127166..3128476 | - | 1311 | WP_003414501.1 | ABC transporter substrate-binding protein | - |
MT49_RS14905 | 3128479..3129306 | - | 828 | WP_003414504.1 | carbohydrate ABC transporter permease | - |
MT49_RS14910 | 3129303..3130214 | - | 912 | WP_003414505.1 | sugar ABC transporter permease | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 131 a.a. Molecular weight: 14610.74 Da Isoelectric Point: 6.7594
>T285105 WP_003414492.1 NZ_HG813240:c3125004-3124612 [Mycobacterium tuberculosis 49-02]
MTTVLLDSHVAYWWSAEPQRLSMAASQAIEHADELAVAAISWFELAWLAEQERIQLAIPVLSWLQQLAEHVRTVGITPSV
AATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRLRSHRHPRPVTVW
MTTVLLDSHVAYWWSAEPQRLSMAASQAIEHADELAVAAISWFELAWLAEQERIQLAIPVLSWLQQLAEHVRTVGITPSV
AATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRLRSHRHPRPVTVW
Download Length: 393 bp
Antitoxin
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A7U4BWM8 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A829CBY8 |