Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN-CcdA
Location 638632..639308 Replicon chromosome
Accession NZ_HG813240
Organism Mycobacterium tuberculosis 49-02

Toxin (Protein)


Gene name vapC Uniprot ID G0TPQ9
Locus tag MT49_RS02855 Protein ID WP_003898500.1
Coordinates 638632..639045 (-) Length 138 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID G0TPR0
Locus tag MT49_RS02860 Protein ID WP_003402915.1
Coordinates 639042..639308 (-) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MT49_RS02825 633977..634279 - 303 WP_003402896.1 DUF3349 domain-containing protein -
MT49_RS02830 634339..634617 - 279 WP_003402901.1 hypothetical protein -
MT49_RS02835 634614..635867 - 1254 WP_003402904.1 inorganic phosphate transporter family protein -
MT49_RS02840 635987..636373 - 387 WP_003402907.1 VOC family protein -
MT49_RS02845 636436..637320 - 885 WP_003402909.1 SDR family oxidoreductase -
MT49_RS02850 637416..638318 - 903 WP_003915439.1 1,4-dihydroxy-2-naphthoyl-CoA synthase -
MT49_RS02855 638632..639045 - 414 WP_003898500.1 PIN domain-containing protein Toxin
MT49_RS02860 639042..639308 - 267 WP_003402915.1 antitoxin VapB3 Antitoxin
MT49_RS02865 639500..641215 - 1716 WP_003402917.1 fatty-acid--CoA ligase FadD8 -
MT49_RS02870 641293..642897 + 1605 WP_003402920.1 amidohydrolase -
MT49_RS02875 642894..643874 + 981 WP_003402923.1 o-succinylbenzoate synthase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Pae0151-like, PIN domain

(13-129)

Antitoxin

Post-segregation antitoxin CcdA

(19-61)


Sequences

Toxin        


Download         Length: 138 a.a.        Molecular weight: 14667.78 Da        Isoelectric Point: 7.3603

>T285058 WP_003898500.1 NZ_HG813240:c639045-638632 [Mycobacterium tuberculosis 49-02]
VRASPTSPPEQVVVDASAMVDLLARTSDRCSAVRARLARTAMHAPAHFDAEVLSALGRMQRAGALTVAYVDAALEELRQV
PVTRHGLSSLLAGAWSRRDTLRLTDALYVELAETAGLVLLTTDERLARAWPSAHAIG

Download         Length: 414 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 9543.79 Da        Isoelectric Point: 4.5994

>AT285058 WP_003402915.1 NZ_HG813240:c639308-639042 [Mycobacterium tuberculosis 49-02]
MLSRRTKTIVVCTLVCMARLNVYVPDELAERARARGLNVSALTQAAISAELENSATDAWLEGLEPRSTGARHDDVLGAID
AARDEFEA

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB G0TPQ9

Antitoxin

Source ID Structure
AlphaFold DB G0TPR0

References