Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2042964..2043104 | Replicon | chromosome |
| Accession | NZ_HG738868 | ||
| Organism | Serratia marcescens SMB2099 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2043008..2043104 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2042964..2043104 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SMB2099_RS09705 | 2038164..2038589 | + | 426 | WP_033638066.1 | RNA polymerase-binding protein DksA | - |
| SMB2099_RS09710 | 2038782..2039735 | + | 954 | WP_079656425.1 | prolyl aminopeptidase | - |
| SMB2099_RS09715 | 2039767..2039997 | - | 231 | WP_033642715.1 | DNA polymerase III subunit theta | - |
| SMB2099_RS09720 | 2040343..2040861 | + | 519 | WP_025302449.1 | non-heme ferritin | - |
| SMB2099_RS09725 | 2041155..2041571 | + | 417 | WP_046686875.1 | CopC domain-containing protein YobA | - |
| SMB2099_RS09730 | 2041574..2042455 | + | 882 | WP_033646425.1 | copper homeostasis membrane protein CopD | - |
| SMB2099_RS09735 | 2042525..2042866 | + | 342 | WP_025302452.1 | YebY family protein | - |
| - | 2042964..2043104 | - | 141 | - | - | Antitoxin |
| - | 2043008..2043104 | + | 97 | - | - | Toxin |
| SMB2099_RS09740 | 2043357..2043761 | + | 405 | WP_033646424.1 | hypothetical protein | - |
| SMB2099_RS09745 | 2043758..2043976 | - | 219 | WP_033638114.1 | hypothetical protein | - |
| SMB2099_RS24275 | 2044040..2044204 | - | 165 | WP_154067227.1 | hypothetical protein | - |
| SMB2099_RS09750 | 2044496..2044846 | + | 351 | WP_033638116.1 | DUF4377 domain-containing protein | - |
| SMB2099_RS09755 | 2045030..2046229 | + | 1200 | WP_033638117.1 | trans-2-enoyl-CoA reductase family protein | - |
| SMB2099_RS09760 | 2046457..2046675 | + | 219 | WP_033646423.1 | hypothetical protein | - |
| SMB2099_RS09765 | 2046847..2047152 | + | 306 | WP_033646422.1 | hypothetical protein | - |
| SMB2099_RS09770 | 2047196..2047531 | + | 336 | WP_033638120.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T285044 NZ_HG738868:2043008-2043104 [Serratia marcescens SMB2099]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT285044 NZ_HG738868:c2043104-2042964 [Serratia marcescens SMB2099]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
