Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1811595..1811866 | Replicon | chromosome |
| Accession | NZ_HG738867 | ||
| Organism | Escherichia coli str. K-12 substr. MC4100 strain K-12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1811633..1811736 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1811595..1811866 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BN896_RS09060 (BN896_1649) | 1808752..1810191 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BN896_RS09065 (BN896_1650) | 1810309..1810545 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BN896_RS09070 (BN896_1651) | 1810650..1810841 | + | 192 | WP_000457842.1 | YebW family protein | - |
| BN896_RS09075 (BN896_1652) | 1810842..1811498 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1811595..1811866 | + | 272 | - | - | Antitoxin |
| - | 1811633..1811736 | - | 104 | - | - | Toxin |
| BN896_RS09085 (BN896_1653) | 1811894..1812235 | - | 342 | WP_000976476.1 | YebY family protein | - |
| BN896_RS09090 (BN896_1654) | 1812248..1813120 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| BN896_RS09095 (BN896_1655) | 1813124..1813498 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| BN896_RS09100 (BN896_1656) | 1813637..1813867 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BN896_RS09105 (BN896_1657) | 1813969..1814625 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| BN896_RS09110 (BN896_1658) | 1814649..1815311 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T285018 NZ_HG738867:c1811736-1811633 [Escherichia coli str. K-12 substr. MC4100]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT285018 NZ_HG738867:1811595-1811866 [Escherichia coli str. K-12 substr. MC4100]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
