Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1278736..1278876 | Replicon | chromosome |
| Accession | NZ_HG326223 | ||
| Organism | Serratia marcescens subsp. marcescens Db11 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1278780..1278876 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1278736..1278876 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SMDB11_RS06015 | 1274005..1274400 | + | 396 | WP_025302446.1 | RidA family protein | - |
| SMDB11_RS06020 | 1274557..1275510 | + | 954 | WP_025302447.1 | prolyl aminopeptidase | - |
| SMDB11_RS06025 | 1275541..1275771 | - | 231 | WP_025302448.1 | DNA polymerase III subunit theta | - |
| SMDB11_RS06030 | 1276117..1276635 | + | 519 | WP_025302449.1 | non-heme ferritin | - |
| SMDB11_RS06035 | 1276960..1277343 | + | 384 | WP_025302450.1 | CopC domain-containing protein YobA | - |
| SMDB11_RS06040 | 1277346..1278227 | + | 882 | WP_025302451.1 | copper homeostasis membrane protein CopD | - |
| SMDB11_RS06045 | 1278297..1278638 | + | 342 | WP_025302452.1 | YebY family protein | - |
| - | 1278736..1278876 | - | 141 | - | - | Antitoxin |
| - | 1278780..1278876 | + | 97 | - | - | Toxin |
| SMDB11_RS24040 | 1279543..1279685 | + | 143 | Protein_1202 | DUF1367 family protein | - |
| SMDB11_RS06055 | 1281335..1281742 | + | 408 | WP_025302453.1 | hypothetical protein | - |
| SMDB11_RS06060 | 1281878..1282228 | + | 351 | WP_025302454.1 | DUF4377 domain-containing protein | - |
| SMDB11_RS06065 | 1282267..1283103 | - | 837 | WP_049833020.1 | aminoglycoside phosphotransferase family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T284991 NZ_HG326223:1278780-1278876 [Serratia marcescens subsp. marcescens Db11]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT284991 NZ_HG326223:c1278876-1278736 [Serratia marcescens subsp. marcescens Db11]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
