Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2225316..2225587 | Replicon | chromosome |
| Accession | NZ_HF572917 | ||
| Organism | Escherichia coli strain HUSEC2011 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2225354..2225457 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2225316..2225587 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUS2011_RS12220 | 2222473..2223912 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HUS2011_RS12225 | 2224030..2224266 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HUS2011_RS12230 | 2224371..2224562 | + | 192 | WP_001296140.1 | YebW family protein | - |
| HUS2011_RS12235 | 2224563..2225219 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 2225316..2225587 | + | 272 | - | - | Antitoxin |
| - | 2225354..2225457 | - | 104 | - | - | Toxin |
| HUS2011_RS12245 | 2225615..2225956 | - | 342 | WP_000976472.1 | YebY family protein | - |
| HUS2011_RS12250 | 2225969..2226841 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| HUS2011_RS12255 | 2226845..2227219 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| HUS2011_RS12260 | 2227358..2227588 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HUS2011_RS12265 | 2227690..2228346 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| HUS2011_RS12270 | 2228370..2229032 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T284960 NZ_HF572917:c2225457-2225354 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT284960 NZ_HF572917:2225316-2225587 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
