Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2132981..2133098 | Replicon | chromosome |
| Accession | NZ_HF571988 | ||
| Organism | Yersinia enterocolitica (type O:5) str. YE53/03 isolate host faecal sample | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2133003..2133097 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2132981..2133098 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YE5303_RS09925 | 2128597..2129553 | + | 957 | WP_046050791.1 | prolyl aminopeptidase | - |
| YE5303_RS09930 | 2129602..2129835 | - | 234 | WP_004389928.1 | DNA polymerase III subunit theta | - |
| YE5303_RS09935 | 2130219..2130728 | + | 510 | WP_005170444.1 | non-heme ferritin | - |
| YE5303_RS09940 | 2131119..2131505 | + | 387 | WP_005170441.1 | CopC domain-containing protein YobA | - |
| YE5303_RS09945 | 2131507..2132391 | + | 885 | WP_046050792.1 | copper homeostasis membrane protein CopD | - |
| YE5303_RS09950 | 2132488..2132829 | + | 342 | WP_005170437.1 | YebY family protein | - |
| - | 2132981..2133098 | - | 118 | - | - | Antitoxin |
| - | 2133003..2133097 | + | 95 | - | - | Toxin |
| YE5303_RS09955 | 2133176..2133310 | - | 135 | WP_046050793.1 | integrase | - |
| YE5303_RS09960 | 2133938..2134564 | + | 627 | WP_019079681.1 | DUF1120 domain-containing protein | - |
| YE5303_RS09965 | 2134937..2135149 | + | 213 | WP_046050794.1 | hypothetical protein | - |
| YE5303_RS09970 | 2135442..2135852 | - | 411 | WP_050130756.1 | hypothetical protein | - |
| YE5303_RS09975 | 2135849..2136136 | - | 288 | WP_072082958.1 | hypothetical protein | - |
| YE5303_RS09980 | 2136159..2136542 | - | 384 | Protein_1944 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 95 bp
>T284945 NZ_HF571988:2133003-2133097 [Yersinia enterocolitica (type O:5) str. YE53/03]
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTATTTTT
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTATTTTT
Antitoxin
Download Length: 118 bp
>AT284945 NZ_HF571988:c2133098-2132981 [Yersinia enterocolitica (type O:5) str. YE53/03]
TAAAAATAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG
TAAAAATAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG
