Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3599113..3599258 | Replicon | chromosome |
| Accession | NZ_FO834906 | ||
| Organism | Klebsiella pneumoniae strain Kp52.145 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3599120..3599222 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3599113..3599258 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BN49_RS19260 | 3594645..3596078 | + | 1434 | WP_016529029.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BN49_RS19265 | 3596194..3596433 | + | 240 | WP_002911393.1 | YebV family protein | - |
| BN49_RS19270 | 3596531..3596722 | + | 192 | WP_002911395.1 | YebW family protein | - |
| BN49_RS19275 | 3596719..3597372 | - | 654 | WP_016529030.1 | protein-serine/threonine phosphatase | - |
| BN49_RS19280 | 3597529..3598497 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| BN49_RS30735 | 3598602..3598745 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3599113..3599258 | + | 146 | - | - | Antitoxin |
| - | 3599120..3599222 | - | 103 | - | - | Toxin |
| BN49_RS19290 | 3599381..3599719 | - | 339 | WP_016529031.1 | YebY family protein | - |
| BN49_RS19295 | 3599736..3600605 | - | 870 | WP_004184661.1 | copper homeostasis membrane protein CopD | - |
| BN49_RS19300 | 3600609..3600983 | - | 375 | WP_016529032.1 | CopC domain-containing protein YobA | - |
| BN49_RS19305 | 3601096..3601326 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| BN49_RS19310 | 3601405..3602064 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| BN49_RS19315 | 3602068..3604128 | - | 2061 | WP_004148850.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T284932 NZ_FO834906:c3599222-3599120 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT284932 NZ_FO834906:3599113-3599258 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
