284862

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PfiT-PfiA/ParE(toxin)
Location 343414..344020 Replicon chromosome
Accession NZ_CP128548
Organism Pseudomonas kurunegalensis strain NMI3456_12

Toxin (Protein)


Gene name PfiT Uniprot ID A0A6G6UCX8
Locus tag LU664_RS01495 Protein ID WP_060501213.1
Coordinates 343414..343761 (-) Length 116 a.a.

Antitoxin (Protein)


Gene name PfiA Uniprot ID A0A923H1P8
Locus tag LU664_RS01500 Protein ID WP_025754068.1
Coordinates 343772..344020 (-) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LU664_RS01480 (LU664_001480) 338847..340214 - 1368 WP_164524045.1 ATP-binding protein -
LU664_RS01485 (LU664_001485) 340216..340938 - 723 WP_060501217.1 response regulator -
LU664_RS01490 (LU664_001490) 341079..343376 + 2298 WP_164524046.1 TonB-dependent siderophore receptor -
LU664_RS01495 (LU664_001495) 343414..343761 - 348 WP_060501213.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
LU664_RS01500 (LU664_001500) 343772..344020 - 249 WP_025754068.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
LU664_RS01505 (LU664_001505) 344921..345820 - 900 WP_164524047.1 hypothetical protein -
LU664_RS01510 (LU664_001510) 345823..346938 - 1116 WP_164524048.1 DUF3696 domain-containing protein -
LU664_RS01515 (LU664_001515) 346935..348188 - 1254 WP_206520113.1 DUF262 domain-containing protein -
LU664_RS01520 (LU664_001520) 348410..348685 - 276 WP_232905541.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-100)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 116 a.a.        Molecular weight: 12751.62 Da        Isoelectric Point: 6.6372

>T284862 WP_060501213.1 NZ_CP128548:c343761-343414 [Pseudomonas kurunegalensis]
MSKPTIRFTHSASQSIEDQVHHLAVYHGTAAALEKITTLVDTIEHRLAAAPVGYPVSPQASGLGVMQYRELNVDGYRVFY
EVIETDNAIAVGLVLRQKQSVEQALIRYCLIYPLP

Download         Length: 348 bp

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9307.61 Da        Isoelectric Point: 6.4706

>AT284862 WP_025754068.1 NZ_CP128548:c344020-343772 [Pseudomonas kurunegalensis]
MRVETISYLKRHAADLDLEEPMVVTQNGVPAYVVESYADRKQRDEAIALVKLLAIGSREYAQGKHSSAEDLKTRLLKKFS
EE

Download         Length: 249 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A6G6UCX8

Antitoxin

Source ID Structure

References