284846

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pmenTA/darT(toxin)
Location 326485..328214 Replicon chromosome
Accession NZ_CP128543
Organism Pseudomonas soli strain NMI4264_15

Toxin (Protein)


Gene name pmenT Uniprot ID -
Locus tag LU688_RS01390 Protein ID WP_094011570.1
Coordinates 326485..327126 (+) Length 214 a.a.

Antitoxin (Protein)


Gene name pmenA Uniprot ID -
Locus tag LU688_RS01395 Protein ID WP_094011569.1
Coordinates 327126..328214 (+) Length 363 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LU688_RS01370 (LU688_01370) 322573..323088 + 516 WP_038707192.1 dihydrofolate reductase -
LU688_RS01375 (LU688_01375) 323122..324513 - 1392 WP_038707193.1 L-cystine transporter -
LU688_RS01380 (LU688_01380) 324758..325816 + 1059 WP_023629699.1 phosphorylcholine phosphatase -
LU688_RS01385 (LU688_01385) 325907..326488 + 582 WP_110605155.1 DarT ssDNA thymidine ADP-ribosyltransferase family protein -
LU688_RS01390 (LU688_01390) 326485..327126 + 642 WP_094011570.1 DUF4433 domain-containing protein Toxin
LU688_RS01395 (LU688_01395) 327126..328214 + 1089 WP_094011569.1 macro domain-containing protein Antitoxin
LU688_RS01400 (LU688_01400) 328278..330119 - 1842 WP_094011568.1 dihydroxy-acid dehydratase -
LU688_RS01405 (LU688_01405) 330581..332257 + 1677 WP_094011567.1 DUF4153 domain-containing protein -
LU688_RS01410 (LU688_01410) 332313..332714 - 402 WP_023629701.1 lysozyme inhibitor LprI family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

ssDNA thymidine ADP-ribosyltransferase, DarT

(14-213)

Antitoxin

Macro domain

(18-130)


Sequences

Toxin        


Download         Length: 214 a.a.        Molecular weight: 24545.03 Da        Isoelectric Point: 8.8650

>T284846 WP_094011570.1 NZ_CP128543:326485-327126 [Pseudomonas soli]
MTYTRLNPSKALIWRIVHRDNLPWLLDNGLCAVSRGNLSSGYVGIGNPDLISKRSRRAVPIDPGGTLADYVPFYFTPFSV
MMKNIHSGRGVQQRRNEEIVILVSSLYHVRSLGLPFVFTDAHAYPDWAGYYSDLEHLDKIDWQILQSRDFKRDPDDPRKM
ERYQAEALIHGHVPVAGLLGIVCYNEALQRRVDQEVRQRQLDLPVHARPGWYF

Download         Length: 642 bp

Antitoxin


Download         Length: 363 a.a.        Molecular weight: 40527.43 Da        Isoelectric Point: 6.1116

>AT284846 WP_094011569.1 NZ_CP128543:327126-328214 [Pseudomonas soli]
MIRFTQGNLLEAKAEALVNTVNTVGVMGKGIALMFKERFVENYRLYAAACKADEVVTGKMFITEVRELDGPRWVVNFPTK
RHWRSPSQLAWITDGLYDLRRFILANAVSSIAIPPLGAGNGGLPWAAVREQIEVVLGDLDTDVLVFEPTSKYQNVSKRTG
VEKLTPARALIAELVRRYWVLGMECSLLEIQKLAWFLERSIERFTPDDNPLNLQFSAHKYGPYTNRLEHLLNNLDGSYLH
CDKRIGDAGPLDVIWFDEGRKAFVDTYLHSEAKAYLPALEFTAELIDGFESPFGMELLATVDWLLHRDGVAPTVDAIRDG
LKNWSGGKEAATRKSALFDDDSLSVALKKLSAFHVQSASPVH

Download         Length: 1089 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References