Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) /RES-TIGR02293
Location 3638248..3639131 Replicon chromosome
Accession NZ_CP128508
Organism Pseudomonas asiatica strain F19-1

Toxin (Protein)


Gene name - Uniprot ID A0A0C1HTG7
Locus tag QUC26_RS16910 Protein ID WP_015270851.1
Coordinates 3638248..3638685 (-) Length 146 a.a.

Antitoxin (Protein)


Gene name - Uniprot ID -
Locus tag QUC26_RS16915 Protein ID WP_274298142.1
Coordinates 3638682..3639131 (-) Length 150 a.a.

Genomic Context

QUC26_RS16900QUC26_RS16905QUC26_RS16925QUC26_RS16930QUC26_RS16935QUC26_RS16895QUC26_RS16910QUC26_RS16915QUC26_RS16920QUC26_RS16940
Location: 3635988..3636914 (927 bp)
Type: Others
Protein ID: WP_013973160.1
Location: 3637086..3638240 (1155 bp)
Type: Others
Protein ID: WP_013973161.1
Location: 3639988..3640911 (924 bp)
Type: Others
Protein ID: WP_013973165.1
Location: 3640959..3641789 (831 bp)
Type: Others
Protein ID: WP_013973166.1
Location: 3641840..3642424 (585 bp)
Type: Others
Protein ID: WP_013973167.1
Location: 3634618..3635847 (1230 bp)
Type: Others
Protein ID: WP_013973159.1
Location: 3638248..3638685 (438 bp)
Type: Toxin
Protein ID: WP_015270851.1
Location: 3638682..3639131 (450 bp)
Type: Antitoxin
Protein ID: WP_274298142.1
Location: 3639230..3639883 (654 bp)
Type: Others
Protein ID: WP_013973164.1
Location: 3642545..3643762 (1218 bp)
Type: Others
Protein ID: WP_044047087.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
QUC26_RS16895 (QUC26_16895)3634618..3635847-1230WP_013973159.1acyl-CoA dehydrogenase-
QUC26_RS16900 (QUC26_16900)3635988..3636914+927WP_013973160.1LysR family transcriptional regulator-
QUC26_RS16905 (QUC26_16905)3637086..3638240+1155WP_013973161.1aminotransferase class V-fold PLP-dependent enzyme-
QUC26_RS16910 (QUC26_16910)3638248..3638685-438WP_015270851.1RES family NAD+ phosphorylaseToxin
QUC26_RS16915 (QUC26_16915)3638682..3639131-450WP_274298142.1DUF2384 domain-containing proteinAntitoxin
QUC26_RS16920 (QUC26_16920)3639230..3639883-654WP_013973164.1oxygen-insensitive NAD(P)H-dependent nitroreductase NfsB-
QUC26_RS16925 (QUC26_16925)3639988..3640911+924WP_013973165.1LysR family transcriptional regulator-
QUC26_RS16930 (QUC26_16930)3640959..3641789+831WP_013973166.1AraC family transcriptional regulator-
QUC26_RS16935 (QUC26_16935)3641840..3642424+585WP_013973167.1LysE family translocator-
QUC26_RS16940 (QUC26_16940)3642545..3643762-1218WP_044047087.1sugar transporter-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

RES domain

(3-137)

Antitoxin

Antitoxin Xre-like, helix-turn-helix domain

(33-91)


Sequences

Toxin        


Download         Length: 146 a.a.        Molecular weight: 15969.19 Da        Isoelectric Point: 5.1199

>T284684 WP_015270851.1 NZ_CP128508:c3638685-3638248 [Pseudomonas asiatica]
VILWRISAYADLSGTGGLRVSGRWHQAGRPVVYAATSPAGAMLEVLVHLEIDPEDFPTTMRLLRIELPDTVSQAQLPALQ
PGWSSQTELTRGLGNRFLDECSALLLPVPSAIMPSTTNYLFNPRHPQANSARLEVEDFTPDSRLF

Download         Length: 438 bp

Antitoxin


Download         Length: 150 a.a.        Molecular weight: 17032.64 Da        Isoelectric Point: 6.3405

>AT284684 WP_274298142.1 NZ_CP128508:c3639131-3638682 [Pseudomonas asiatica]
MLAEVLRDNGYHEYRARLHALLEIPELASDFEIHTRITHGFAATWLVKLTELGVFTPVERDQIIPLRTLKTRIERDQPLT
VEESDRLFRSAHITAMAEAVFGEVGKAKRWLSKPKERFSGLTPMQMLTTQQGTTQVEEMLLQIAEGFGL

Download         Length: 450 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
AlphaFold DBA0A0C1HTG7

Antitoxin

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Source
ID
Structure
No matching records found

References