Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) /Acetyltransf_4(toxin)
Location 1861323..1862831 Replicon chromosome
Accession NZ_CP128506
Organism Pseudomonas aeruginosa strain Fe11-1

Toxin (Protein)


Gene name - Uniprot ID Q9HYX1
Locus tag QUC24_RS08745 Protein ID WP_003119682.1
Coordinates 1861323..1861910 (+) Length 196 a.a.

Antitoxin (Protein)


Gene name - Uniprot ID A0A5B3ABU1
Locus tag QUC24_RS08750 Protein ID WP_003119683.1
Coordinates 1861977..1862831 (+) Length 285 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QUC24_RS08740 (QUC24_08740) 1857578..1861057 - 3480 WP_003117605.1 PAS domain-containing hybrid sensor histidine kinase/response regulator -
QUC24_RS08745 (QUC24_08745) 1861323..1861910 + 588 WP_003119682.1 GNAT family protein Toxin
QUC24_RS08750 (QUC24_08750) 1861977..1862831 + 855 WP_003119683.1 AraC family transcriptional regulator Antitoxin
QUC24_RS08755 (QUC24_08755) 1862928..1865093 + 2166 WP_196624118.1 TonB-dependent siderophore receptor -
QUC24_RS08760 (QUC24_08760) 1865268..1867142 + 1875 WP_003158329.1 MFS transporter -
QUC24_RS08765 (QUC24_08765) 1867203..1867412 - 210 WP_003115568.1 cold-shock protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

GNAT domain

(20-152)

Antitoxin

AraC-type arabinose-binding/dimerisation domain

(19-151)


Sequences

Toxin        


Download         Length: 196 a.a.        Molecular weight: 21901.23 Da        Isoelectric Point: 9.8676

>T284672 WP_003119682.1 NZ_CP128506:1861323-1861910 [Pseudomonas aeruginosa]
MSRRAPMFKPLPITLQRGALRLEPLVEADIPELVSLAEANREALQYMDGPTRPDWYRQSLAEQREGRALPLAVRLGVQLV
GTTRFAEFLPALPACEIGWTWLDQAQHGSGLNRMIKYLMLKHAFDNLRMVRVQLSTAASNLRAQGAIDKLGAQREGVLRN
HRRLAGGRLDDTFVYSITDHEWPQVKAALEASFTG

Download         Length: 588 bp

Antitoxin


Download         Length: 285 a.a.        Molecular weight: 31875.19 Da        Isoelectric Point: 7.5295

>AT284672 WP_003119683.1 NZ_CP128506:1861977-1862831 [Pseudomonas aeruginosa]
VPDETSGEHTHFWRAAELGGVELLHARYVEQRFAPHVHSSFALVIIEQGAQRFRHRGGEHLAPLGSMVLINPDEVHTGSK
AHDAGWLYRGYYPEMEQIDGILDELEIHHGGVPRFADSVIHDQPLARAFVHLHRLLAEHAGSLETQTRWRETVLALFRRH
ARLPEAPKAGQEPLAVARARELLAARLLDPPSLEELAAAVNLSPFHFARVFRRATGMPPHAWLRQRRLEQARALLKSGRA
PLEVALELGFADQSHLGRQFKQAYGVAPGEYRSACARSSLTIYE

Download         Length: 855 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 1YRE
PDB 8GXJ

Antitoxin

Source ID Structure
AlphaFold DB A0A5B3ABU1

References