Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1897653..1897798 | Replicon | chromosome |
| Accession | NZ_CP128487 | ||
| Organism | Klebsiella pneumoniae strain YZEF2-2C | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1897689..1897791 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1897653..1897798 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QTN20_RS11205 | 1892783..1894843 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| QTN20_RS11210 | 1894847..1895506 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| QTN20_RS11215 | 1895585..1895815 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| QTN20_RS11220 | 1895928..1896302 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| QTN20_RS11225 | 1896306..1897175 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| QTN20_RS11230 | 1897192..1897530 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1897653..1897798 | - | 146 | - | - | Antitoxin |
| - | 1897689..1897791 | + | 103 | - | - | Toxin |
| QTN20_RS11235 | 1898165..1898308 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| QTN20_RS11240 | 1898413..1899381 | - | 969 | WP_074422051.1 | VirK/YbjX family protein | - |
| QTN20_RS11245 | 1899538..1900191 | + | 654 | WP_004175436.1 | protein-serine/threonine phosphatase | - |
| QTN20_RS11250 | 1900188..1900379 | - | 192 | WP_002911395.1 | YebW family protein | - |
| QTN20_RS11255 | 1900477..1900716 | - | 240 | WP_002911393.1 | YebV family protein | - |
| QTN20_RS11260 | 1900832..1902265 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T284636 NZ_CP128487:1897689-1897791 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT284636 NZ_CP128487:c1897798-1897653 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
