Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 862408..863065 Replicon chromosome
Accession NZ_CP128487
Organism Klebsiella pneumoniae strain YZEF2-2C

Toxin (Protein)


Gene name cptA Uniprot ID W8UCT0
Locus tag QTN20_RS06320 Protein ID WP_002916310.1
Coordinates 862655..863065 (+) Length 137 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID W8UQ37
Locus tag QTN20_RS06315 Protein ID WP_002916312.1
Coordinates 862408..862674 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QTN20_RS06290 (857564) 857564..858997 - 1434 WP_002916322.1 6-phospho-beta-glucosidase BglA -
QTN20_RS06295 (859116) 859116..859844 - 729 WP_002916321.1 MurR/RpiR family transcriptional regulator -
QTN20_RS06300 (859894) 859894..860205 + 312 WP_002916319.1 N(4)-acetylcytidine aminohydrolase -
QTN20_RS06305 (860369) 860369..861028 + 660 WP_002916317.1 hemolysin III family protein -
QTN20_RS06310 (861179) 861179..862162 - 984 WP_002916313.1 tRNA-modifying protein YgfZ -
QTN20_RS06315 (862408) 862408..862674 + 267 WP_002916312.1 FAD assembly factor SdhE Antitoxin
QTN20_RS06320 (862655) 862655..863065 + 411 WP_002916310.1 protein YgfX Toxin
QTN20_RS06325 (863072) 863072..863593 - 522 WP_002916308.1 flavodoxin FldB -
QTN20_RS06330 (863694) 863694..864590 + 897 WP_004144729.1 site-specific tyrosine recombinase XerD -
QTN20_RS06335 (864613) 864613..865326 + 714 WP_002916301.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
QTN20_RS06340 (865332) 865332..867065 + 1734 WP_004151783.1 single-stranded-DNA-specific exonuclease RecJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-132)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 137 a.a.        Molecular weight: 16049.85 Da        Isoelectric Point: 11.4778

>T284635 WP_002916310.1 NZ_CP128487:862655-863065 [Klebsiella pneumoniae]
VVLWQSDLRISWRAQWFSLLLHGVVAALVLLVPWPLSYTPIWLLLLSLVVFDCVRSQRRIHARRGEIKLLTDSRLRWQNA
EWEILGTPWVINSGMLLRLRHVDTRRGQHLWLAADSMDAGEWRDLRRLVLQKPAQE

Download         Length: 411 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10480.98 Da        Isoelectric Point: 5.1116

>AT284635 WP_002916312.1 NZ_CP128487:862408-862674 [Klebsiella pneumoniae]
MDINNKARIHWACRRGMRELDISIMPFFEYEYDTLSDADKQLFIRLLENDDPDLFNWLMNHGKPADAELQRMVTLIQTRN
RERGPVAI

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GSW7

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GY41

References