Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/RHH(antitoxin)
Location 4245275..4245818 Replicon chromosome
Accession NZ_CP128477
Organism Rhizobium sp. SSM4.3

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag QTL56_RS20135 Protein ID WP_245135144.1
Coordinates 4245519..4245818 (+) Length 100 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag QTL56_RS20130 Protein ID WP_245135141.1
Coordinates 4245275..4245526 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QTL56_RS20115 4240384..4242318 + 1935 WP_245135136.1 DUF2207 domain-containing protein -
QTL56_RS20120 4242328..4242891 + 564 WP_245135138.1 hypothetical protein -
QTL56_RS20125 4243016..4245169 + 2154 WP_245135139.1 glycine--tRNA ligase subunit beta -
QTL56_RS20130 4245275..4245526 + 252 WP_245135141.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
QTL56_RS20135 4245519..4245818 + 300 WP_245135144.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QTL56_RS20140 4245815..4246333 + 519 WP_245135145.1 DUF523 domain-containing protein -
QTL56_RS20145 4246375..4247031 + 657 WP_245135148.1 TetR/AcrR family transcriptional regulator -
QTL56_RS20150 4247047..4248039 + 993 WP_245135149.1 MDR family oxidoreductase -
QTL56_RS20155 4248372..4250189 - 1818 WP_245135151.1 methyl-accepting chemotaxis protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-92)

Antitoxin

Antitoxin ParD

(1-79)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 11380.91 Da        Isoelectric Point: 6.7281

>T284628 WP_245135144.1 NZ_CP128477:4245519-4245818 [Rhizobium sp. SSM4.3]
VAEVRLSPAARRDFLDIGDYTRDLWLEAQAERYLRQILGIIADIGTHPFSGGEVGALRQGYRRRRSGSHLSFYIILEDGM
VEVIRIIHERADVSRRLDE

Download         Length: 300 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9169.27 Da        Isoelectric Point: 4.4633

>AT284628 WP_245135141.1 NZ_CP128477:4245275-4245526 [Rhizobium sp. SSM4.3]
MNKPVQVTIAEPYDSFIDSQFESGAFKSAQEVVEGGLRLLKGEQARAEWLRKALIEGENSGPSVPFDPEDLMASVGERWK
SRG

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References