Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 1633012..1633682 Replicon chromosome
Accession NZ_CP128477
Organism Rhizobium sp. SSM4.3

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag QTL56_RS08005 Protein ID WP_245136347.1
Coordinates 1633422..1633682 (-) Length 87 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag QTL56_RS08000 Protein ID WP_245136348.1
Coordinates 1633012..1633422 (-) Length 137 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QTL56_RS07980 1629066..1629530 + 465 WP_112240108.1 Lrp/AsnC ligand binding domain-containing protein -
QTL56_RS07985 1629685..1630401 + 717 WP_289393495.1 LuxR C-terminal-related transcriptional regulator -
QTL56_RS07990 1630618..1631727 - 1110 WP_245136350.1 DUF2333 family protein -
QTL56_RS07995 1631720..1633015 - 1296 WP_245136349.1 hypothetical protein -
QTL56_RS08000 1633012..1633422 - 411 WP_245136348.1 helix-turn-helix transcriptional regulator Antitoxin
QTL56_RS08005 1633422..1633682 - 261 WP_245136347.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QTL56_RS08010 1633734..1635647 - 1914 WP_245136346.1 AAA family ATPase -
QTL56_RS08015 1635650..1636801 - 1152 WP_229574222.1 hypothetical protein -
QTL56_RS08020 1636880..1637968 - 1089 WP_229574223.1 hypothetical protein -
QTL56_RS08025 1638169..1638555 - 387 WP_245136345.1 cytochrome c family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-82)

Antitoxin

Cro/C1-type helix-turn-helix domain

(76-123)


Sequences

Toxin        


Download         Length: 87 a.a.        Molecular weight: 9911.28 Da        Isoelectric Point: 10.6564

>T284627 WP_245136347.1 NZ_CP128477:c1633682-1633422 [Rhizobium sp. SSM4.3]
VRDVVYSKDAIRSLNRIPANEARRIRSKVLQYATDPASLANNVKKLRDSRYHRLRIGDWRVIFREDGTVVDVVRVAARGE
AYEGEL

Download         Length: 261 bp

Antitoxin


Download         Length: 137 a.a.        Molecular weight: 15055.95 Da        Isoelectric Point: 4.2772

>AT284627 WP_245136348.1 NZ_CP128477:c1633422-1633012 [Rhizobium sp. SSM4.3]
MTIASSFTTPNGEEMIVLSRKDYEALIARIEDLEDSLAVADFERKLAASEEELIPAEYVNRMGEGESPIRVWRDFRGMAA
KDLAAAAGISTAYLSEIETGKKDGSVATLKAIADVLKLDLDDLYWRHEDRKVTDTA

Download         Length: 411 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References