Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1930030..1930174 | Replicon | chromosome |
| Accession | NZ_CP128466 | ||
| Organism | Klebsiella variicola strain 22KM2707 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1930066..1930168 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1930030..1930174 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QSV42_RS09700 (QSV42_09700) | 1925160..1927220 | + | 2061 | WP_046881615.1 | oligopeptidase B | - |
| QSV42_RS09705 (QSV42_09705) | 1927224..1927883 | - | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| QSV42_RS09710 (QSV42_09710) | 1927962..1928192 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| QSV42_RS09715 (QSV42_09715) | 1928306..1928680 | + | 375 | WP_038421459.1 | CopC domain-containing protein YobA | - |
| QSV42_RS09720 (QSV42_09720) | 1928684..1929553 | + | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| QSV42_RS09725 (QSV42_09725) | 1929570..1929908 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 1930030..1930174 | - | 145 | - | - | Antitoxin |
| - | 1930066..1930168 | + | 103 | - | - | Toxin |
| QSV42_RS09730 (QSV42_09730) | 1930553..1930696 | - | 144 | WP_046878768.1 | Ecr family regulatory small membrane protein | - |
| QSV42_RS09735 (QSV42_09735) | 1930800..1931768 | - | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| QSV42_RS09740 (QSV42_09740) | 1931925..1932578 | + | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| QSV42_RS09745 (QSV42_09745) | 1932575..1932766 | - | 192 | WP_002911395.1 | YebW family protein | - |
| QSV42_RS09750 (QSV42_09750) | 1932864..1933103 | - | 240 | WP_002911393.1 | YebV family protein | - |
| QSV42_RS09755 (QSV42_09755) | 1933219..1934652 | - | 1434 | WP_289642575.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T284614 NZ_CP128466:1930066-1930168 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT284614 NZ_CP128466:c1930174-1930030 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
