284561

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 4566376..4566895 Replicon chromosome
Accession NZ_CP128416
Organism Rhizobium sp. CSC1952

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag QTA58_RS22085 Protein ID WP_289670847.1
Coordinates 4566376..4566657 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag QTA58_RS22090 Protein ID WP_289670848.1
Coordinates 4566647..4566895 (-) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QTA58_RS22065 (QTA58_22065) 4561676..4562893 - 1218 WP_085424196.1 LL-diaminopimelate aminotransferase -
QTA58_RS22070 (QTA58_22070) 4563009..4563380 - 372 WP_143531756.1 hypothetical protein -
QTA58_RS22075 (QTA58_22075) 4563543..4565390 + 1848 WP_289670845.1 class I poly(R)-hydroxyalkanoic acid synthase -
QTA58_RS22080 (QTA58_22080) 4565401..4566108 + 708 WP_289670846.1 DNA/RNA nuclease SfsA -
QTA58_RS22085 (QTA58_22085) 4566376..4566657 - 282 WP_289670847.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QTA58_RS22090 (QTA58_22090) 4566647..4566895 - 249 WP_289670848.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
QTA58_RS22095 (QTA58_22095) 4567074..4567910 + 837 WP_085424192.1 type I methionyl aminopeptidase -
QTA58_RS22100 (QTA58_22100) 4567912..4568715 + 804 WP_289670849.1 DNA repair protein RadC -
QTA58_RS22105 (QTA58_22105) 4568895..4570706 - 1812 WP_289670850.1 ABC transporter ATP-binding protein -
QTA58_RS22110 (QTA58_22110) 4570722..4571483 - 762 WP_289670852.1 DUF1028 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(7-84)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10894.73 Da        Isoelectric Point: 10.8319

>T284561 WP_289670847.1 NZ_CP128416:c4566657-4566376 [Rhizobium sp. CSC1952]
MSYELAFLDAALKEWRKLDPNIRDQFRKKLAERLENPRVPSAQLYGAKDRYKIKLRTAGYRLVYEVRDAQLIVLVIAVGR
RDRNAVYKAAGKR

Download         Length: 282 bp

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 8753.11 Da        Isoelectric Point: 4.1225

>AT284561 WP_289670848.1 NZ_CP128416:c4566895-4566647 [Rhizobium sp. CSC1952]
MVSVVLAEVTASVSELKRNPMGTVAAGDGAPVAILNRNEPAFYCIPAKAYEVMMDRLEDMELNALADSRAGEAIVKVTLD
EL

Download         Length: 249 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References