Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relB-parE/RHH(antitoxin)
Location 4434492..4435045 Replicon chromosome
Accession NZ_CP128416
Organism Rhizobium sp. CSC1952

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag QTA58_RS21415 Protein ID WP_289670729.1
Coordinates 4434752..4435045 (+) Length 98 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag QTA58_RS21410 Protein ID WP_289670727.1
Coordinates 4434492..4434764 (+) Length 91 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QTA58_RS21385 (QTA58_21385) 4429544..4430470 - 927 WP_289670722.1 alpha/beta hydrolase -
QTA58_RS21390 (QTA58_21390) 4430519..4430995 + 477 WP_289670723.1 MarR family transcriptional regulator -
QTA58_RS21395 (QTA58_21395) 4431003..4432826 - 1824 WP_289670725.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
QTA58_RS21400 (QTA58_21400) 4432856..4433215 - 360 WP_085424312.1 DUF971 domain-containing protein -
QTA58_RS21405 (QTA58_21405) 4433435..4434424 + 990 WP_289673264.1 GTP 3',8-cyclase MoaA -
QTA58_RS21410 (QTA58_21410) 4434492..4434764 + 273 WP_289670727.1 ribbon-helix-helix protein, CopG family Antitoxin
QTA58_RS21415 (QTA58_21415) 4434752..4435045 + 294 WP_289670729.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QTA58_RS21420 (QTA58_21420) 4435087..4435857 - 771 WP_289670730.1 SDR family oxidoreductase -
QTA58_RS21425 (QTA58_21425) 4435948..4436430 - 483 WP_289670732.1 hypothetical protein -
QTA58_RS21430 (QTA58_21430) 4436596..4437477 + 882 WP_289670734.1 LysR family transcriptional regulator -
QTA58_RS21435 (QTA58_21435) 4437482..4440043 - 2562 WP_289670736.1 HAMP domain-containing methyl-accepting chemotaxis protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-95)

Antitoxin

Ribbon-helix-helix protein, CopG

(3-40)


Sequences

Toxin        


Download         Length: 98 a.a.        Molecular weight: 11019.68 Da        Isoelectric Point: 9.8561

>T284560 WP_289670729.1 NZ_CP128416:4434752-4435045 [Rhizobium sp. CSC1952]
VPQVIVTRGAILGIERCRTFLKKAGVQVSRRASDAISRQFALLETSPEIGRPFQHNAELRELLIPFGASGYIALYRYEPD
GDAVYVLAFRHQREVRY

Download         Length: 294 bp

Antitoxin


Download         Length: 91 a.a.        Molecular weight: 10429.54 Da        Isoelectric Point: 4.4331

>AT284560 WP_289670727.1 NZ_CP128416:4434492-4434764 [Rhizobium sp. CSC1952]
MATSLKIDDDLEGRVQKLAVSRQQSTQGLMREAIEQYVEREEARENFKQEALASWEDYKETGLHLTGDELRAWMKTWGTE
AETEAPECHK

Download         Length: 273 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References