Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/RHH(antitoxin)
Location 2260143..2260674 Replicon chromosome
Accession NZ_CP128416
Organism Rhizobium sp. CSC1952

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag QTA58_RS11110 Protein ID WP_289672801.1
Coordinates 2260378..2260674 (+) Length 99 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag QTA58_RS11105 Protein ID WP_289673126.1
Coordinates 2260143..2260388 (+) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QTA58_RS11080 (QTA58_11080) 2255513..2256748 + 1236 WP_085419698.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
QTA58_RS11085 (QTA58_11085) 2256850..2257203 + 354 WP_085419697.1 YciI family protein -
QTA58_RS11090 (QTA58_11090) 2257203..2258468 + 1266 WP_289672799.1 sigma factor -
QTA58_RS11095 (QTA58_11095) 2258472..2259113 - 642 WP_085419695.1 LysE family translocator -
QTA58_RS11100 (QTA58_11100) 2259185..2260042 - 858 WP_289672800.1 SDR family NAD(P)-dependent oxidoreductase -
QTA58_RS11105 (QTA58_11105) 2260143..2260388 + 246 WP_289673126.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
QTA58_RS11110 (QTA58_11110) 2260378..2260674 + 297 WP_289672801.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QTA58_RS11115 (QTA58_11115) 2260788..2262011 + 1224 WP_085419931.1 argininosuccinate synthase -
QTA58_RS11120 (QTA58_11120) 2262067..2263251 - 1185 WP_289673127.1 multidrug effflux MFS transporter -
QTA58_RS11125 (QTA58_11125) 2263277..2263738 - 462 WP_085419691.1 MarR family winged helix-turn-helix transcriptional regulator -
QTA58_RS11130 (QTA58_11130) 2263892..2264533 + 642 WP_289672802.1 LysE family translocator -
QTA58_RS11135 (QTA58_11135) 2264551..2264976 - 426 WP_085419689.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-93)

Antitoxin

Antitoxin ParD

(1-79)


Sequences

Toxin        


Download         Length: 99 a.a.        Molecular weight: 11290.00 Da        Isoelectric Point: 10.5374

>T284556 WP_289672801.1 NZ_CP128416:2260378-2260674 [Rhizobium sp. CSC1952]
MAPKRYRLSPQARKDLEGIWLYTFKTWSRVQADGYYDELIAAVADLANGSKRGRMIDNIRSGYLSLSYGSHFIIYKQGAT
GINVVRILHQRMNISRHL

Download         Length: 297 bp

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 8794.66 Da        Isoelectric Point: 3.9169

>AT284556 WP_289673126.1 NZ_CP128416:2260143-2260388 [Rhizobium sp. CSC1952]
MGKMTSITVDEELTAFIAKQVSDGNYSSADEVVEAALRLLRDSEDGLEAIRAAIDEGEASGEPEPFDAEAFLQEMHRKYG
A

Download         Length: 246 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References