Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/RelE(toxin)
Location 1389043..1389602 Replicon chromosome
Accession NZ_CP128416
Organism Rhizobium sp. CSC1952

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag QTA58_RS07175 Protein ID WP_085421950.1
Coordinates 1389321..1389602 (+) Length 94 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag QTA58_RS07170 Protein ID WP_085421951.1
Coordinates 1389043..1389324 (+) Length 94 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QTA58_RS07145 (QTA58_07145) 1384145..1384525 + 381 WP_085421956.1 methylglyoxal synthase -
QTA58_RS07150 (QTA58_07150) 1384534..1385556 + 1023 WP_289672235.1 glucokinase -
QTA58_RS07155 (QTA58_07155) 1385696..1387480 + 1785 WP_289672236.1 ABC transporter ATP-binding protein -
QTA58_RS07160 (QTA58_07160) 1387502..1388320 + 819 WP_289672237.1 4-hydroxy-tetrahydrodipicolinate reductase -
QTA58_RS07165 (QTA58_07165) 1388343..1388978 + 636 WP_085421952.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
QTA58_RS07170 (QTA58_07170) 1389043..1389324 + 282 WP_085421951.1 hypothetical protein Antitoxin
QTA58_RS07175 (QTA58_07175) 1389321..1389602 + 282 WP_085421950.1 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family Toxin
QTA58_RS07180 (QTA58_07180) 1389603..1390343 - 741 WP_289672238.1 phosphonate metabolism transcriptional regulator PhnF -
QTA58_RS07185 (QTA58_07185) 1390427..1390900 + 474 WP_289672239.1 phosphonate C-P lyase system protein PhnG -
QTA58_RS07190 (QTA58_07190) 1390900..1391502 + 603 WP_289672240.1 phosphonate C-P lyase system protein PhnH -
QTA58_RS07195 (QTA58_07195) 1391605..1392711 + 1107 WP_289672241.1 carbon-phosphorus lyase complex subunit PhnI -
QTA58_RS07200 (QTA58_07200) 1392708..1393589 + 882 WP_289672242.1 alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ -
QTA58_RS07205 (QTA58_07205) 1393819..1394595 + 777 WP_085423325.1 phosphonate C-P lyase system protein PhnK -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-89)

Antitoxin

Ribbon-helix-helix protein, RHH domain

(6-60)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10836.41 Da        Isoelectric Point: 10.4171

>T284555 WP_085421950.1 NZ_CP128416:1389321-1389602 [Rhizobium sp. CSC1952]
MKLFWTRQARLDRRAIFDYIRRENPIAAVAMDHQFTKAADQLARHPLSGRAGRVTDTRELPAHPSYLLIYDVKEDAVRIL
NVIHTARQWPPSD

Download         Length: 282 bp

Antitoxin


Download         Length: 94 a.a.        Molecular weight: 10627.65 Da        Isoelectric Point: 4.3969

>AT284555 WP_085421951.1 NZ_CP128416:1389043-1389324 [Rhizobium sp. CSC1952]
MAEATFTFRVEEELKAAFSEAAKAQDQSDAQLLRTFMRDYVRQQQETAEYDDWFRRKVQKAIDSANAGDLISGDDVEAEF
AALREEARKSSAR

Download         Length: 282 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References