Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | parDE/RelE(toxin) |
Location | 1389043..1389602 | Replicon | chromosome |
Accession | NZ_CP128416 | ||
Organism | Rhizobium sp. CSC1952 |
Toxin (Protein)
Gene name | parE | Uniprot ID | - |
Locus tag | QTA58_RS07175 | Protein ID | WP_085421950.1 |
Coordinates | 1389321..1389602 (+) | Length | 94 a.a. |
Antitoxin (Protein)
Gene name | parD | Uniprot ID | - |
Locus tag | QTA58_RS07170 | Protein ID | WP_085421951.1 |
Coordinates | 1389043..1389324 (+) | Length | 94 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
QTA58_RS07145 (QTA58_07145) | 1384145..1384525 | + | 381 | WP_085421956.1 | methylglyoxal synthase | - |
QTA58_RS07150 (QTA58_07150) | 1384534..1385556 | + | 1023 | WP_289672235.1 | glucokinase | - |
QTA58_RS07155 (QTA58_07155) | 1385696..1387480 | + | 1785 | WP_289672236.1 | ABC transporter ATP-binding protein | - |
QTA58_RS07160 (QTA58_07160) | 1387502..1388320 | + | 819 | WP_289672237.1 | 4-hydroxy-tetrahydrodipicolinate reductase | - |
QTA58_RS07165 (QTA58_07165) | 1388343..1388978 | + | 636 | WP_085421952.1 | 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase | - |
QTA58_RS07170 (QTA58_07170) | 1389043..1389324 | + | 282 | WP_085421951.1 | hypothetical protein | Antitoxin |
QTA58_RS07175 (QTA58_07175) | 1389321..1389602 | + | 282 | WP_085421950.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin |
QTA58_RS07180 (QTA58_07180) | 1389603..1390343 | - | 741 | WP_289672238.1 | phosphonate metabolism transcriptional regulator PhnF | - |
QTA58_RS07185 (QTA58_07185) | 1390427..1390900 | + | 474 | WP_289672239.1 | phosphonate C-P lyase system protein PhnG | - |
QTA58_RS07190 (QTA58_07190) | 1390900..1391502 | + | 603 | WP_289672240.1 | phosphonate C-P lyase system protein PhnH | - |
QTA58_RS07195 (QTA58_07195) | 1391605..1392711 | + | 1107 | WP_289672241.1 | carbon-phosphorus lyase complex subunit PhnI | - |
QTA58_RS07200 (QTA58_07200) | 1392708..1393589 | + | 882 | WP_289672242.1 | alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ | - |
QTA58_RS07205 (QTA58_07205) | 1393819..1394595 | + | 777 | WP_085423325.1 | phosphonate C-P lyase system protein PhnK | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 a.a. Molecular weight: 10836.41 Da Isoelectric Point: 10.4171
>T284555 WP_085421950.1 NZ_CP128416:1389321-1389602 [Rhizobium sp. CSC1952]
MKLFWTRQARLDRRAIFDYIRRENPIAAVAMDHQFTKAADQLARHPLSGRAGRVTDTRELPAHPSYLLIYDVKEDAVRIL
NVIHTARQWPPSD
MKLFWTRQARLDRRAIFDYIRRENPIAAVAMDHQFTKAADQLARHPLSGRAGRVTDTRELPAHPSYLLIYDVKEDAVRIL
NVIHTARQWPPSD
Download Length: 282 bp
Antitoxin
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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