284553

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN-MazE
Location 764053..764687 Replicon chromosome
Accession NZ_CP128416
Organism Rhizobium sp. CSC1952

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag QTA58_RS04050 Protein ID WP_289671816.1
Coordinates 764053..764457 (-) Length 135 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag QTA58_RS04055 Protein ID WP_085422491.1
Coordinates 764457..764687 (-) Length 77 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QTA58_RS04035 (QTA58_04035) 760789..762063 - 1275 WP_289673009.1 3-phosphoshikimate 1-carboxyvinyltransferase -
QTA58_RS04040 (QTA58_04040) 762153..762704 - 552 WP_289671814.1 LemA family protein -
QTA58_RS04045 (QTA58_04045) 762804..763760 - 957 WP_289671815.1 glycine--tRNA ligase subunit alpha -
QTA58_RS04050 (QTA58_04050) 764053..764457 - 405 WP_289671816.1 PIN domain-containing protein Toxin
QTA58_RS04055 (QTA58_04055) 764457..764687 - 231 WP_085422491.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Antitoxin
QTA58_RS04060 (QTA58_04060) 764752..764943 - 192 WP_085422490.1 hypothetical protein -
QTA58_RS04065 (QTA58_04065) 764972..765838 - 867 WP_289671817.1 S49 family peptidase -
QTA58_RS04070 (QTA58_04070) 765953..766750 - 798 WP_085423379.1 methyltransferase -
QTA58_RS04075 (QTA58_04075) 767001..767222 - 222 WP_085422488.1 DUF2007 domain-containing protein -
QTA58_RS04080 (QTA58_04080) 767327..768343 + 1017 WP_289671818.1 polyprenyl synthetase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(7-116)

Antitoxin

SpoVT-AbrB domain

(5-40)


Sequences

Toxin        


Download         Length: 135 a.a.        Molecular weight: 14691.09 Da        Isoelectric Point: 5.8673

>T284553 WP_289671816.1 NZ_CP128416:c764457-764053 [Rhizobium sp. CSC1952]
MPLVANFLDTNILVYAFSEGPKAEVAQALMAEPFVLSVQALNEFANVGRKKLKLSWERIEEAIDDLSSVASAIVVLDKQA
TKAALKLVGRYNLAFYDALMLAAALKANCGRYYSEDLQHGLLIDGKLTAINPFR

Download         Length: 405 bp

Antitoxin


Download         Length: 77 a.a.        Molecular weight: 8645.03 Da        Isoelectric Point: 9.9469

>AT284553 WP_085422491.1 NZ_CP128416:c764687-764457 [Rhizobium sp. CSC1952]
MLIAKWGNSLAVRIPASVVEALDLKEGDDIAIRVADGPVFEIKRNDVRQKALERIKAFKLKLPPDWKFDRDEANSR

Download         Length: 231 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References