284550

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) BrnTA/BrnT-BrnA
Location 41789..42356 Replicon chromosome
Accession NZ_CP128416
Organism Rhizobium sp. CSC1952

Toxin (Protein)


Gene name brnT Uniprot ID -
Locus tag QTA58_RS00275 Protein ID WP_289671242.1
Coordinates 41789..42046 (+) Length 86 a.a.

Antitoxin (Protein)


Gene name brnA Uniprot ID -
Locus tag QTA58_RS00280 Protein ID WP_289671243.1
Coordinates 42036..42356 (+) Length 107 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QTA58_RS00255 (QTA58_00255) 37594..39588 - 1995 WP_289671238.1 hypothetical protein -
QTA58_RS00260 (QTA58_00260) 39592..39852 - 261 WP_289671239.1 hypothetical protein -
QTA58_RS00265 (QTA58_00265) 39864..41222 - 1359 WP_289671240.1 hypothetical protein -
QTA58_RS00270 (QTA58_00270) 41219..41701 - 483 WP_289671241.1 DNA-packaging protein -
QTA58_RS00275 (QTA58_00275) 41789..42046 + 258 WP_289671242.1 BrnT family toxin Toxin
QTA58_RS00280 (QTA58_00280) 42036..42356 + 321 WP_289671243.1 BrnA antitoxin family protein Antitoxin
QTA58_RS00285 (QTA58_00285) 42449..43636 - 1188 WP_289671244.1 hypothetical protein -
QTA58_RS00290 (QTA58_00290) 43608..44630 - 1023 WP_289671245.1 nucleoid-associated protein -
QTA58_RS00295 (QTA58_00295) 45241..45750 - 510 WP_289671246.1 transcription termination/antitermination NusG family protein -
QTA58_RS00300 (QTA58_00300) 45830..46360 - 531 WP_289671247.1 ribonuclease H -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 12438..60618 48180


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Ribonuclease toxin, BrnT, of type II toxin-antitoxin system

(5-79)

Antitoxin

BrnA antitoxin of type II toxin-antitoxin system

(28-104)


Sequences

Toxin        


Download         Length: 86 a.a.        Molecular weight: 9781.26 Da        Isoelectric Point: 6.2228

>T284550 WP_289671242.1 NZ_CP128416:41789-42046 [Rhizobium sp. CSC1952]
MKITYDENKRLTNIEKHFGLDFADLDMDFFEGATIYPAKDDRLMAIGEFKGQIILVVIFKPLGSEAISVISMRHASRKER
ETHGY

Download         Length: 258 bp

Antitoxin


Download         Length: 107 a.a.        Molecular weight: 11845.31 Da        Isoelectric Point: 8.6197

>AT284550 WP_289671243.1 NZ_CP128416:42036-42356 [Rhizobium sp. CSC1952]
MATKFSAKRPLTDAEEAEIQKAIASDPDSPEATDEQLAKGRPFREALPELAASIDRERARRGRPPVEKPRQHVSLRLDPD
VIDHYKATGKGWQSRMNDDLRKAAGL

Download         Length: 321 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References