Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relE-yefM/YoeB-YefM |
Location | 5388290..5388795 | Replicon | chromosome |
Accession | NZ_CP128260 | ||
Organism | Pseudomonas fluorescens strain PH.SM |
Toxin (Protein)
Gene name | relE | Uniprot ID | Q3K782 |
Locus tag | QR290_RS24130 | Protein ID | WP_011335833.1 |
Coordinates | 5388541..5388795 (+) | Length | 85 a.a. |
Antitoxin (Protein)
Gene name | yefM | Uniprot ID | - |
Locus tag | QR290_RS24125 | Protein ID | WP_115079126.1 |
Coordinates | 5388290..5388544 (+) | Length | 85 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
QR290_RS24100 (QR290_24100) | 5383607..5383972 | + | 366 | WP_289203759.1 | hypothetical protein | - |
QR290_RS24105 (QR290_24105) | 5383997..5384746 | - | 750 | WP_289203760.1 | hypothetical protein | - |
QR290_RS24110 (QR290_24110) | 5384867..5385241 | + | 375 | WP_115079123.1 | hypothetical protein | - |
QR290_RS24115 (QR290_24115) | 5385353..5386099 | + | 747 | WP_289203761.1 | hypothetical protein | - |
QR290_RS24120 (QR290_24120) | 5386171..5388090 | + | 1920 | WP_289203762.1 | alkaline phosphatase D family protein | - |
QR290_RS24125 (QR290_24125) | 5388290..5388544 | + | 255 | WP_115079126.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin |
QR290_RS24130 (QR290_24130) | 5388541..5388795 | + | 255 | WP_011335833.1 | Txe/YoeB family addiction module toxin | Toxin |
QR290_RS24135 (QR290_24135) | 5388789..5389976 | - | 1188 | WP_115079127.1 | aspartate aminotransferase family protein | - |
QR290_RS24140 (QR290_24140) | 5390079..5390984 | + | 906 | WP_289203763.1 | LysR family transcriptional regulator | - |
QR290_RS24145 (QR290_24145) | 5391030..5391434 | + | 405 | WP_289203764.1 | GNAT family N-acetyltransferase | - |
QR290_RS24150 (QR290_24150) | 5391501..5392016 | + | 516 | WP_115079130.1 | hypothetical protein | - |
QR290_RS24155 (QR290_24155) | 5392035..5392739 | - | 705 | WP_115079131.1 | peptide-methionine (S)-S-oxide reductase MsrA | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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