Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/-
Location 3808258..3808726 Replicon chromosome
Accession NZ_CP128260
Organism Pseudomonas fluorescens strain PH.SM

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag QR290_RS16880 Protein ID WP_289205308.1
Coordinates 3808499..3808726 (+) Length 76 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag QR290_RS16875 Protein ID WP_289203146.1
Coordinates 3808258..3808452 (+) Length 65 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QR290_RS16855 (QR290_16855) 3803673..3804641 - 969 WP_289203143.1 Gfo/Idh/MocA family oxidoreductase -
QR290_RS16860 (QR290_16860) 3804651..3805538 - 888 WP_289203144.1 Dyp-type peroxidase -
QR290_RS16865 (QR290_16865) 3805814..3806845 - 1032 WP_289203145.1 AraC family transcriptional regulator -
QR290_RS16870 (QR290_16870) 3807057..3808004 + 948 WP_115078168.1 transporter -
QR290_RS16875 (QR290_16875) 3808258..3808452 + 195 WP_289203146.1 stability determinant Antitoxin
QR290_RS16880 (QR290_16880) 3808499..3808726 + 228 WP_289205308.1 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 76 a.a.        Molecular weight: 8568.86 Da        Isoelectric Point: 11.0871

>T284488 WP_289205308.1 NZ_CP128260:3808499-3808726 [Pseudomonas fluorescens]
IEQYNSNASVALQRKVGAATQRLSSIPYGYRYGRVPSTREMVINPNYLLVYRVNGPIKILTLVHTRRQYPRTSAT

Download         Length: 228 bp

Antitoxin


Download         Length: 65 a.a.        Molecular weight: 7509.35 Da        Isoelectric Point: 4.6104

>AT284488 WP_289203146.1 NZ_CP128260:3808258-3808452 [Pseudomonas fluorescens]
MSILHSPFYADFESEEEAESYDRWFRAKVQAALDDPSPGIPHEEAMMRLDQLLEERRKNRRAAA

Download         Length: 195 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References