Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2318596..2318864 | Replicon | chromosome |
| Accession | NZ_CP128255 | ||
| Organism | Escherichia coli strain T309.Ta3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2318724..2318826 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2318596..2318864 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QRX22_RS11145 | 2315149..2315811 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QRX22_RS11150 | 2315835..2316491 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QRX22_RS11155 | 2316593..2316823 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QRX22_RS11160 | 2316962..2317336 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QRX22_RS11165 | 2317340..2318212 | + | 873 | WP_033559294.1 | copper homeostasis membrane protein CopD | - |
| QRX22_RS11170 | 2318225..2318566 | + | 342 | WP_001357782.1 | YebY family protein | - |
| - | 2318596..2318864 | - | 269 | - | - | Antitoxin |
| - | 2318724..2318826 | + | 103 | - | - | Toxin |
| QRX22_RS11175 | 2318961..2319617 | + | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| QRX22_RS11180 | 2319618..2319809 | - | 192 | WP_024186842.1 | YebW family protein | - |
| QRX22_RS11185 | 2319914..2320150 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QRX22_RS11190 | 2320269..2321708 | - | 1440 | WP_024186841.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T284465 NZ_CP128255:2318724-2318826 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT284465 NZ_CP128255:c2318864-2318596 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
