Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1547316..1547587 | Replicon | chromosome |
| Accession | NZ_CP128218 | ||
| Organism | Escherichia coli strain TG1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1547354..1547457 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1547316..1547587 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QSI84_RS07730 | 1544473..1545912 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QSI84_RS07735 | 1546030..1546266 | + | 237 | WP_001295499.1 | YebV family protein | - |
| QSI84_RS07740 | 1546371..1546562 | + | 192 | WP_000457842.1 | YebW family protein | - |
| QSI84_RS07745 | 1546563..1547219 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1547316..1547587 | + | 272 | - | - | Antitoxin |
| - | 1547354..1547457 | - | 104 | - | - | Toxin |
| QSI84_RS07750 | 1547615..1547956 | - | 342 | WP_000976476.1 | YebY family protein | - |
| QSI84_RS07755 | 1547969..1548841 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| QSI84_RS07760 | 1548845..1549219 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QSI84_RS07765 | 1549358..1549588 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QSI84_RS07770 | 1549690..1550346 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QSI84_RS07775 | 1550370..1551032 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T284418 NZ_CP128218:c1547457-1547354 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT284418 NZ_CP128218:1547316-1547587 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
