Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3071478..3071623 | Replicon | chromosome |
| Accession | NZ_CP128191 | ||
| Organism | Klebsiella pneumoniae strain KP0714 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3071485..3071587 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3071478..3071623 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QSG82_RS15485 (QSG82_15485) | 3067010..3068443 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QSG82_RS15490 (QSG82_15490) | 3068559..3068798 | + | 240 | WP_002911393.1 | YebV family protein | - |
| QSG82_RS15495 (QSG82_15495) | 3068896..3069087 | + | 192 | WP_002911395.1 | YebW family protein | - |
| QSG82_RS15500 (QSG82_15500) | 3069084..3069737 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| QSG82_RS15505 (QSG82_15505) | 3069894..3070862 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| QSG82_RS15510 (QSG82_15510) | 3070967..3071110 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3071478..3071623 | + | 146 | - | - | Antitoxin |
| - | 3071485..3071587 | - | 103 | - | - | Toxin |
| QSG82_RS15515 (QSG82_15515) | 3071746..3072084 | - | 339 | WP_002911404.1 | YebY family protein | - |
| QSG82_RS15520 (QSG82_15520) | 3072101..3072970 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| QSG82_RS15525 (QSG82_15525) | 3072974..3073348 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| QSG82_RS15530 (QSG82_15530) | 3073461..3073691 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| QSG82_RS15535 (QSG82_15535) | 3073770..3074429 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| QSG82_RS15540 (QSG82_15540) | 3074433..3076493 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T284380 NZ_CP128191:c3071587-3071485 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT284380 NZ_CP128191:3071478-3071623 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
