Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PrpT-parD/RHH(antitoxin)
Location 2881543..2882071 Replicon chromosome
Accession NZ_CP128185
Organism Aliiglaciecola sp. LCG003

Toxin (Protein)


Gene name PrpT Uniprot ID -
Locus tag QR722_RS12440 Protein ID WP_286283179.1
Coordinates 2881543..2881833 (-) Length 97 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag QR722_RS12445 Protein ID WP_286283180.1
Coordinates 2881826..2882071 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QR722_RS12420 (QR722_12420) 2877249..2877773 - 525 WP_286283175.1 ribosome maturation factor RimM -
QR722_RS12425 (QR722_12425) 2877801..2878052 - 252 WP_286283176.1 30S ribosomal protein S16 -
QR722_RS12430 (QR722_12430) 2878563..2880647 + 2085 WP_286283177.1 M13 family metallopeptidase -
QR722_RS12435 (QR722_12435) 2880766..2881521 - 756 WP_286283178.1 tRNA isopentenyl-2-thiomethyl-A-37 hydroxylase MiaE -
QR722_RS12440 (QR722_12440) 2881543..2881833 - 291 WP_286283179.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QR722_RS12445 (QR722_12445) 2881826..2882071 - 246 WP_286283180.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
QR722_RS12450 (QR722_12450) 2882182..2882286 - 105 Protein_2436 tRNA isopentenyl-2-thiomethyl-A-37 hydroxylase MiaE -
QR722_RS12455 (QR722_12455) 2882740..2884143 - 1404 WP_286283181.1 methyl-accepting chemotaxis protein -
QR722_RS12460 (QR722_12460) 2884878..2885318 + 441 WP_286283182.1 hypothetical protein -
QR722_RS12465 (QR722_12465) 2885431..2885883 - 453 WP_286283183.1 hypothetical protein -
QR722_RS12470 (QR722_12470) 2886070..2886747 - 678 WP_286283185.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-91)

Antitoxin

Antitoxin ParD

(7-71)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 10965.55 Da        Isoelectric Point: 4.7468

>T284372 WP_286283179.1 NZ_CP128185:c2881833-2881543 [Aliiglaciecola sp. LCG003]
MASYRLAPLAELDMEAIGEYSFEQWGINQANYYADELVLAFEGLAESPCLGVSCDNVRVGYKFYRQGKHLIYFKTTDYGV
AVIRILHERMSPSLFL

Download         Length: 291 bp

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 9105.25 Da        Isoelectric Point: 8.5759

>AT284372 WP_286283180.1 NZ_CP128185:c2882071-2881826 [Aliiglaciecola sp. LCG003]
MSTIRKTITVTDQQDEWIKAQIVAGRYTNDSEYIRALVRNDQEQNSHDGAIRKALIEGEASGKPQPFEVGAFKARMMAKH
G

Download         Length: 246 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References