Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PumAB/upstrm_HI1419-dnstrm_HI1420
Location 266071..266719 Replicon chromosome
Accession NZ_CP128182
Organism Stenotrophomonas maltophilia strain a7

Toxin (Protein)


Gene name PumA Uniprot ID -
Locus tag QP025_RS01215 Protein ID WP_005407702.1
Coordinates 266071..266376 (+) Length 102 a.a.

Antitoxin (Protein)


Gene name PumB Uniprot ID -
Locus tag QP025_RS01220 Protein ID WP_005407703.1
Coordinates 266417..266719 (+) Length 101 a.a.

Genomic Context

QP025_RS01195QP025_RS01200QP025_RS01205QP025_RS01215QP025_RS01220QP025_RS01235QP025_RS01245QP025_RS01250QP025_RS01255QP025_RS01185QP025_RS01190QP025_RS01225QP025_RS01230QP025_RS01240
Location: 263206..264171 (966 bp)
Type: Others
Protein ID: WP_043035430.1
Location: 264168..264899 (732 bp)
Type: Others
Protein ID: WP_005407698.1
Location: 264909..265763 (855 bp)
Type: Others
Protein ID: WP_005411958.1
Location: 266071..266376 (306 bp)
Type: Toxin
Protein ID: WP_005407702.1
Location: 266417..266719 (303 bp)
Type: Antitoxin
Protein ID: WP_005407703.1
Location: 268359..269129 (771 bp)
Type: Others
Protein ID: WP_005411960.1
Location: 269632..270552 (921 bp)
Type: Others
Protein ID: WP_201863758.1
Location: 270713..270850 (138 bp)
Type: Others
Protein ID: WP_005407710.1
Location: 271057..271278 (222 bp)
Type: Others
Protein ID: WP_004153772.1
Location: 262025..262816 (792 bp)
Type: Others
Protein ID: WP_197569412.1
Location: 262783..263061 (279 bp)
Type: Others
Protein ID: WP_005407696.1
Location: 266977..267276 (300 bp)
Type: Others
Protein ID: WP_005407704.1
Location: 267357..267764 (408 bp)
Type: Others
Protein ID: WP_005407705.1
Location: 269154..269501 (348 bp)
Type: Others
Protein ID: WP_049454229.1
ToxinAntitoxinOther genes
Loading, please wait
Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
QP025_RS01185262025..262816-792WP_197569412.1zinc-dependent peptidase-
QP025_RS01190262783..263061-279WP_005407696.1hypothetical protein-
QP025_RS01195263206..264171+966WP_043035430.1bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA-
QP025_RS01200264168..264899+732WP_005407698.1type III pantothenate kinase-
QP025_RS01205264909..265763+855WP_005411958.1SPOR domain-containing protein-
QP025_RS01215266071..266376+306WP_005407702.1type II toxin-antitoxin system RelE/ParE family toxinToxin
QP025_RS01220266417..266719+303WP_005407703.1putative addiction module antidote proteinAntitoxin
QP025_RS01225266977..267276-300WP_005407704.1hypothetical protein-
QP025_RS01230267357..267764-408WP_005407705.1hypothetical protein-
QP025_RS01235268359..269129+771WP_005411960.1DUF3011 domain-containing protein-
QP025_RS01240269154..269501-348WP_049454229.1hypothetical protein-
QP025_RS01245269632..270552+921WP_201863758.1arginase-
QP025_RS01250270713..270850+138WP_005407710.1entericidin A/B family lipoprotein-
QP025_RS01255271057..271278+222WP_004153772.1CsbD family protein-

Associated MGEs

Loading, please wait
MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(12-90)

Antitoxin

Cro/C1-type helix-turn-helix domain

(43-95)


Sequences

Toxin        


Download         Length: 102 a.a.        Molecular weight: 11444.15 Da        Isoelectric Point: 10.9897

>T284369 WP_005407702.1 NZ_CP128182:266071-266376 [Stenotrophomonas maltophilia]
MKIQRTRQFATWIDALKDVTARARILARIGRLAEGHPGDHRYLADGVSELRIDAGPGYRVYYTQRGRQLVILLVGGDKGS
QQRDIEKAKEIARALRASNWL

Download         Length: 306 bp

Antitoxin


Download         Length: 101 a.a.        Molecular weight: 10703.27 Da        Isoelectric Point: 7.2780

>AT284369 WP_005407703.1 NZ_CP128182:266417-266719 [Stenotrophomonas maltophilia]
MAIKKKVELEAFDVAEHLHTPKEMAAYLDACIEESDGDSAFIAKALGDIARAQGMSKVARAAGLSRESLYRALSGERSPD
FSTILKVTRALGVRLHASAA

Download         Length: 303 bp


Similar Proteins

Only experimentally validated proteins are listed.

Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

Loading, please wait
Source
ID
Structure
No matching records found

Antitoxin

Loading, please wait
Source
ID
Structure
No matching records found

References