Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1957019..1957159 | Replicon | chromosome |
| Accession | NZ_CP127881 | ||
| Organism | Serratia marcescens strain ELP1.10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1957063..1957159 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1957019..1957159 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QRD25_RS09340 (QRD25_09340) | 1952288..1952683 | + | 396 | WP_286094044.1 | RidA family protein | - |
| QRD25_RS09345 (QRD25_09345) | 1952840..1953793 | + | 954 | WP_004928848.1 | prolyl aminopeptidase | - |
| QRD25_RS09350 (QRD25_09350) | 1953825..1954055 | - | 231 | WP_016928156.1 | DNA polymerase III subunit theta | - |
| QRD25_RS09355 (QRD25_09355) | 1954400..1954918 | + | 519 | WP_015377481.1 | non-heme ferritin | - |
| QRD25_RS09360 (QRD25_09360) | 1955210..1955626 | + | 417 | WP_046686875.1 | CopC domain-containing protein YobA | - |
| QRD25_RS09365 (QRD25_09365) | 1955629..1956510 | + | 882 | WP_286094045.1 | copper homeostasis membrane protein CopD | - |
| QRD25_RS09370 (QRD25_09370) | 1956580..1956921 | + | 342 | WP_286094046.1 | YebY family protein | - |
| - | 1957019..1957159 | - | 141 | - | - | Antitoxin |
| - | 1957063..1957159 | + | 97 | - | - | Toxin |
| QRD25_RS09375 (QRD25_09375) | 1957411..1957815 | + | 405 | WP_049188179.1 | hypothetical protein | - |
| QRD25_RS09380 (QRD25_09380) | 1957812..1958030 | - | 219 | WP_004940942.1 | hypothetical protein | - |
| QRD25_RS09385 (QRD25_09385) | 1958105..1958449 | - | 345 | WP_286094047.1 | hypothetical protein | - |
| QRD25_RS09390 (QRD25_09390) | 1958698..1959048 | + | 351 | WP_004940949.1 | DUF4377 domain-containing protein | - |
| QRD25_RS09395 (QRD25_09395) | 1959232..1960431 | + | 1200 | WP_049240250.1 | trans-2-enoyl-CoA reductase family protein | - |
| QRD25_RS09400 (QRD25_09400) | 1960658..1960876 | + | 219 | WP_015377541.1 | hypothetical protein | - |
| QRD25_RS09405 (QRD25_09405) | 1961048..1961353 | + | 306 | WP_004940954.1 | hypothetical protein | - |
| QRD25_RS09410 (QRD25_09410) | 1961402..1961737 | + | 336 | WP_004940957.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T284334 NZ_CP127881:1957063-1957159 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT284334 NZ_CP127881:c1957159-1957019 [Serratia marcescens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
