Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2140809..2140977 | Replicon | chromosome |
| Accession | NZ_CP127873 | ||
| Organism | Klebsiella michiganensis strain ELP1.34B | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2140867..2140970 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2140809..2140977 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QRD21_RS10135 (QRD21_10135) | 2135936..2137996 | + | 2061 | WP_033836507.1 | oligopeptidase B | - |
| QRD21_RS10140 (QRD21_10140) | 2138003..2138662 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| QRD21_RS10145 (QRD21_10145) | 2138741..2138971 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| QRD21_RS10150 (QRD21_10150) | 2139107..2139481 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| QRD21_RS10155 (QRD21_10155) | 2139486..2140355 | + | 870 | WP_286115966.1 | copper homeostasis membrane protein CopD | - |
| QRD21_RS10160 (QRD21_10160) | 2140372..2140710 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2140809..2140977 | - | 169 | - | - | Antitoxin |
| - | 2140867..2140970 | + | 104 | - | - | Toxin |
| QRD21_RS10165 (QRD21_10165) | 2141095..2142054 | - | 960 | WP_046878049.1 | spore coat protein U domain-containing protein | - |
| QRD21_RS10170 (QRD21_10170) | 2142069..2144399 | - | 2331 | WP_286115968.1 | fimbria/pilus outer membrane usher protein | - |
| QRD21_RS10175 (QRD21_10175) | 2144402..2145166 | - | 765 | WP_049102470.1 | fimbria/pilus periplasmic chaperone | - |
| QRD21_RS10180 (QRD21_10180) | 2145185..2145703 | - | 519 | WP_154905510.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T284322 NZ_CP127873:2140867-2140970 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT284322 NZ_CP127873:c2140977-2140809 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
