Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 3675884..3676400 Replicon chromosome
Accession NZ_CP127871
Organism Pseudomonas kurunegalensis strain ANKC.G2

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag QQ992_RS16470 Protein ID WP_286110307.1
Coordinates 3675884..3676165 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag QQ992_RS16475 Protein ID WP_286110308.1
Coordinates 3676155..3676400 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QQ992_RS16445 (QQ992_16445) 3670918..3671760 - 843 WP_286110306.1 FecR domain-containing protein -
QQ992_RS16450 (QQ992_16450) 3671757..3672293 - 537 WP_105946798.1 RNA polymerase sigma factor -
QQ992_RS16455 (QQ992_16455) 3672488..3672667 + 180 WP_028699887.1 hypothetical protein -
QQ992_RS16460 (QQ992_16460) 3672671..3674083 - 1413 WP_019097820.1 amino acid permease -
QQ992_RS16465 (QQ992_16465) 3674409..3675833 + 1425 WP_105946766.1 PLP-dependent aminotransferase family protein -
QQ992_RS16470 (QQ992_16470) 3675884..3676165 - 282 WP_286110307.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QQ992_RS16475 (QQ992_16475) 3676155..3676400 - 246 WP_286110308.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
QQ992_RS16480 (QQ992_16480) 3676599..3677141 + 543 WP_286110309.1 WYL domain-containing protein -
QQ992_RS16485 (QQ992_16485) 3677151..3677873 - 723 WP_286110310.1 hypothetical protein -
QQ992_RS16490 (QQ992_16490) 3677951..3678253 - 303 WP_060497247.1 DUF3077 domain-containing protein -
QQ992_RS16495 (QQ992_16495) 3678453..3679076 + 624 WP_060497248.1 glutathione S-transferase -
QQ992_RS16500 (QQ992_16500) 3679129..3680298 - 1170 WP_286110311.1 MFS transporter -
QQ992_RS16505 (QQ992_16505) 3680393..3681304 + 912 WP_016711216.1 LysR family transcriptional regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-82)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(10-76)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10846.68 Da        Isoelectric Point: 10.8164

>T284311 WP_286110307.1 NZ_CP127871:c3676165-3675884 [Pseudomonas kurunegalensis]
MTYKLEFLPSALKEWSKLGHTVREQIKKKLGERLQSPKVQADALRDLPNHYKIKLRASGYRLVYRVEDERIVVVVVSVGK
RERSGVYHAAQKR

Download         Length: 282 bp

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 8782.21 Da        Isoelectric Point: 4.3611

>AT284311 WP_286110308.1 NZ_CP127871:c3676400-3676155 [Pseudomonas kurunegalensis]
MQSIFADVAVSVSELKKNPSAVMTSAAGMPVAVLNHNRVMGYMVPAELYEAMMERLEDLELSELAKSRLGEKGVPVSLDD
L

Download         Length: 246 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References