Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1877863..1878008 | Replicon | chromosome |
| Accession | NZ_CP127839 | ||
| Organism | Klebsiella pneumoniae RYC492 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1877899..1878001 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1877863..1878008 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QRF73_RS09125 (QRF73_09125) | 1872993..1875053 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| QRF73_RS09130 (QRF73_09130) | 1875057..1875716 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| QRF73_RS09135 (QRF73_09135) | 1875795..1876025 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| QRF73_RS09140 (QRF73_09140) | 1876138..1876512 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| QRF73_RS09145 (QRF73_09145) | 1876516..1877385 | + | 870 | WP_004891049.1 | copper homeostasis membrane protein CopD | - |
| QRF73_RS09150 (QRF73_09150) | 1877402..1877740 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1877863..1878008 | - | 146 | - | - | Antitoxin |
| - | 1877899..1878001 | + | 103 | - | - | Toxin |
| QRF73_RS09155 (QRF73_09155) | 1878376..1878519 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| QRF73_RS09160 (QRF73_09160) | 1878624..1879592 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| QRF73_RS09165 (QRF73_09165) | 1879749..1880402 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| QRF73_RS09170 (QRF73_09170) | 1880399..1880590 | - | 192 | WP_002911395.1 | YebW family protein | - |
| QRF73_RS09175 (QRF73_09175) | 1880688..1880927 | - | 240 | WP_002911393.1 | YebV family protein | - |
| QRF73_RS09180 (QRF73_09180) | 1881043..1882476 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T284261 NZ_CP127839:1877899-1878001 [Klebsiella pneumoniae RYC492]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT284261 NZ_CP127839:c1878008-1877863 [Klebsiella pneumoniae RYC492]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
