284209

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) omega-epsilon-zeta/-
Location 2817511..2818235 Replicon chromosome
Accession NZ_CP127364
Organism Paracidovorax citrulli strain KACC 17001

Toxin (Protein)


Gene name avrRxo1 Uniprot ID -
Locus tag QRO11_RS12825 Protein ID WP_233423719.1
Coordinates 2817511..2817924 (+) Length 138 a.a.

Antitoxin (Protein)


Gene name arc1 Uniprot ID A1TRP1
Locus tag QRO11_RS12830 Protein ID WP_011796139.1
Coordinates 2817939..2818235 (+) Length 99 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QRO11_RS12805 (QRO11_12805) 2813340..2815544 - 2205 WP_041828059.1 TOMM precursor leader peptide-binding protein -
QRO11_RS12810 (QRO11_12810) 2815758..2816027 - 270 WP_225981105.1 hypothetical protein -
QRO11_RS12815 (QRO11_12815) 2816125..2816676 + 552 WP_233427208.1 XopAJ/AvrRxo1 family type III secretion system effector zeta toxin -
QRO11_RS12820 (QRO11_12820) 2816683..2817495 - 813 WP_011793283.1 IS5 family transposase -
QRO11_RS12825 (QRO11_12825) 2817511..2817924 + 414 WP_233423719.1 hypothetical protein Toxin
QRO11_RS12830 (QRO11_12830) 2817939..2818235 + 297 WP_011796139.1 hypothetical protein Antitoxin
QRO11_RS12835 (QRO11_12835) 2818394..2819248 - 855 WP_232521745.1 class I SAM-dependent methyltransferase -
QRO11_RS12840 (QRO11_12840) 2819258..2820055 - 798 WP_011796141.1 BMA_0021/BMA_0022 family TOMM bacteriocin -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- flank IS/Tn - - 2816683..2817495 812


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 138 a.a.        Molecular weight: 14544.26 Da        Isoelectric Point: 6.3243

>T284209 WP_233423719.1 NZ_CP127364:2817511-2817924 [Paracidovorax citrulli]
MTSTPRSKVHNTLYVAVANGFSAVRGHRLDVIDKFLSNPTLGSYHLFGTTGNGSKAMVASVVNGELSIHDPQLYEAITDP
QGARAGDSGDQIIDAALIDRLTKGIDDPARAMDARTALERYAGMTWSDALAAHSSLT

Download         Length: 414 bp

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 11106.62 Da        Isoelectric Point: 6.9795

>AT284209 WP_011796139.1 NZ_CP127364:2817939-2818235 [Paracidovorax citrulli]
MTGLKGADALDFHKKLKERNAALRNAELNAAKELADKNGKEPFDLVKLERLCDTSQAGRLVEGTERQAMYEYMYYVEYKN
VGTLQDFARVVTTLASWS

Download         Length: 297 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A1TRP1

References