Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) omega-epsilon-zeta/-
Location 2934767..2936001 Replicon chromosome
Accession NZ_CP127363
Organism Paracidovorax citrulli strain KACC 17005

Toxin (Protein)


Gene name avrRxo1 Uniprot ID -
Locus tag QRO08_RS13425 Protein ID WP_232521744.1
Coordinates 2934767..2935690 (+) Length 308 a.a.

Antitoxin (Protein)


Gene name arc1 Uniprot ID A1TRP1
Locus tag QRO08_RS13430 Protein ID WP_011796139.1
Coordinates 2935705..2936001 (+) Length 99 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QRO08_RS13400 (QRO08_13400) 2930340..2930678 - 339 WP_011796135.1 hypothetical protein -
QRO08_RS13405 (QRO08_13405) 2930700..2930828 - 129 WP_258868820.1 hypothetical protein -
QRO08_RS13410 (QRO08_13410) 2930994..2931917 - 924 WP_228193810.1 FHA domain-containing protein -
QRO08_RS13415 (QRO08_13415) 2931982..2934168 - 2187 WP_228193811.1 TOMM precursor leader peptide-binding protein -
QRO08_RS13420 (QRO08_13420) 2934400..2934669 - 270 WP_225981105.1 hypothetical protein -
QRO08_RS13425 (QRO08_13425) 2934767..2935690 + 924 WP_232521744.1 XopAJ/AvrRxo1 family type III secretion system effector zeta toxin Toxin
QRO08_RS13430 (QRO08_13430) 2935705..2936001 + 297 WP_011796139.1 hypothetical protein Antitoxin
QRO08_RS13435 (QRO08_13435) 2936160..2937014 - 855 WP_232521745.1 class I SAM-dependent methyltransferase -
QRO08_RS13440 (QRO08_13440) 2937024..2937821 - 798 WP_011796141.1 BMA_0021/BMA_0022 family TOMM bacteriocin -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Zeta toxin domain

(38-177)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 308 a.a.        Molecular weight: 32876.16 Da        Isoelectric Point: 6.2340

>T284207 WP_232521744.1 NZ_CP127363:2934767-2935690 [Paracidovorax citrulli]
MAHPQNWRPERRQLHDRLIGDAKTAAQDFAEVIERGGHPPTLFALRGNTAAGKTRMATQTIPVLANALKESGGAGCINPD
IFKRSLAETPEGAKLTSAQVHAESCILADRLEDELRLQKTASGAAISMLVDKRLAGAHEIDAYIKLAQETGRKIELCDID
APLEQSLMGVLQRKPEGDAPRPPYVAVANGFSAVRGHRLDVIDKFLSNPTLGSYHLFGTTGNGSKAMVASVVNGELSIHD
PQLYEAITDPQGARAGDSGDQIIDAALIDRLTKGIDDPARAMDARTALERYAGMTWSDALAAHSSLT

Download         Length: 924 bp

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 11106.62 Da        Isoelectric Point: 6.9795

>AT284207 WP_011796139.1 NZ_CP127363:2935705-2936001 [Paracidovorax citrulli]
MTGLKGADALDFHKKLKERNAALRNAELNAAKELADKNGKEPFDLVKLERLCDTSQAGRLVEGTERQAMYEYMYYVEYKN
VGTLQDFARVVTTLASWS

Download         Length: 297 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A1TRP1

References