284203

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) omega-epsilon-zeta/-
Location 2056755..2057989 Replicon chromosome
Accession NZ_CP127361
Organism Paracidovorax citrulli strain KACC 18782

Toxin (Protein)


Gene name avrRxo1 Uniprot ID -
Locus tag QRO09_RS09305 Protein ID WP_232521744.1
Coordinates 2056755..2057678 (+) Length 308 a.a.

Antitoxin (Protein)


Gene name arc1 Uniprot ID A1TRP1
Locus tag QRO09_RS09310 Protein ID WP_011796139.1
Coordinates 2057693..2057989 (+) Length 99 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QRO09_RS09280 (QRO09_09280) 2052328..2052666 - 339 WP_011796135.1 hypothetical protein -
QRO09_RS09285 (QRO09_09285) 2052688..2052816 - 129 WP_258868820.1 hypothetical protein -
QRO09_RS09290 (QRO09_09290) 2052982..2053905 - 924 WP_228193810.1 FHA domain-containing protein -
QRO09_RS09295 (QRO09_09295) 2053970..2056156 - 2187 WP_228193811.1 TOMM precursor leader peptide-binding protein -
QRO09_RS09300 (QRO09_09300) 2056388..2056657 - 270 WP_225981105.1 hypothetical protein -
QRO09_RS09305 (QRO09_09305) 2056755..2057678 + 924 WP_232521744.1 XopAJ/AvrRxo1 family type III secretion system effector zeta toxin Toxin
QRO09_RS09310 (QRO09_09310) 2057693..2057989 + 297 WP_011796139.1 hypothetical protein Antitoxin
QRO09_RS09315 (QRO09_09315) 2058148..2059002 - 855 WP_232521745.1 class I SAM-dependent methyltransferase -
QRO09_RS09320 (QRO09_09320) 2059012..2059809 - 798 WP_011796141.1 BMA_0021/BMA_0022 family TOMM bacteriocin -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Zeta toxin domain

(38-177)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 308 a.a.        Molecular weight: 32876.16 Da        Isoelectric Point: 6.2340

>T284203 WP_232521744.1 NZ_CP127361:2056755-2057678 [Paracidovorax citrulli]
MAHPQNWRPERRQLHDRLIGDAKTAAQDFAEVIERGGHPPTLFALRGNTAAGKTRMATQTIPVLANALKESGGAGCINPD
IFKRSLAETPEGAKLTSAQVHAESCILADRLEDELRLQKTASGAAISMLVDKRLAGAHEIDAYIKLAQETGRKIELCDID
APLEQSLMGVLQRKPEGDAPRPPYVAVANGFSAVRGHRLDVIDKFLSNPTLGSYHLFGTTGNGSKAMVASVVNGELSIHD
PQLYEAITDPQGARAGDSGDQIIDAALIDRLTKGIDDPARAMDARTALERYAGMTWSDALAAHSSLT

Download         Length: 924 bp

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 11106.62 Da        Isoelectric Point: 6.9795

>AT284203 WP_011796139.1 NZ_CP127361:2057693-2057989 [Paracidovorax citrulli]
MTGLKGADALDFHKKLKERNAALRNAELNAAKELADKNGKEPFDLVKLERLCDTSQAGRLVEGTERQAMYEYMYYVEYKN
VGTLQDFARVVTTLASWS

Download         Length: 297 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A1TRP1

References