284201

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) omega-epsilon-zeta/-
Location 2102744..2103978 Replicon chromosome
Accession NZ_CP127360
Organism Paracidovorax citrulli strain KACC 18784

Toxin (Protein)


Gene name avrRxo1 Uniprot ID -
Locus tag QRO10_RS09570 Protein ID WP_232521744.1
Coordinates 2102744..2103667 (+) Length 308 a.a.

Antitoxin (Protein)


Gene name arc1 Uniprot ID A1TRP1
Locus tag QRO10_RS09575 Protein ID WP_011796139.1
Coordinates 2103682..2103978 (+) Length 99 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QRO10_RS09545 (QRO10_09545) 2098317..2098655 - 339 WP_011796135.1 hypothetical protein -
QRO10_RS09550 (QRO10_09550) 2098677..2098805 - 129 WP_258868820.1 hypothetical protein -
QRO10_RS09555 (QRO10_09555) 2098971..2099894 - 924 WP_228193810.1 FHA domain-containing protein -
QRO10_RS09560 (QRO10_09560) 2099959..2102163 - 2205 WP_041828059.1 TOMM precursor leader peptide-binding protein -
QRO10_RS09565 (QRO10_09565) 2102377..2102646 - 270 WP_225981105.1 hypothetical protein -
QRO10_RS09570 (QRO10_09570) 2102744..2103667 + 924 WP_232521744.1 XopAJ/AvrRxo1 family type III secretion system effector zeta toxin Toxin
QRO10_RS09575 (QRO10_09575) 2103682..2103978 + 297 WP_011796139.1 hypothetical protein Antitoxin
QRO10_RS09580 (QRO10_09580) 2104137..2104991 - 855 WP_232521745.1 class I SAM-dependent methyltransferase -
QRO10_RS09585 (QRO10_09585) 2105001..2105798 - 798 WP_011796141.1 BMA_0021/BMA_0022 family TOMM bacteriocin -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Zeta toxin domain

(38-177)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 308 a.a.        Molecular weight: 32876.16 Da        Isoelectric Point: 6.2340

>T284201 WP_232521744.1 NZ_CP127360:2102744-2103667 [Paracidovorax citrulli]
MAHPQNWRPERRQLHDRLIGDAKTAAQDFAEVIERGGHPPTLFALRGNTAAGKTRMATQTIPVLANALKESGGAGCINPD
IFKRSLAETPEGAKLTSAQVHAESCILADRLEDELRLQKTASGAAISMLVDKRLAGAHEIDAYIKLAQETGRKIELCDID
APLEQSLMGVLQRKPEGDAPRPPYVAVANGFSAVRGHRLDVIDKFLSNPTLGSYHLFGTTGNGSKAMVASVVNGELSIHD
PQLYEAITDPQGARAGDSGDQIIDAALIDRLTKGIDDPARAMDARTALERYAGMTWSDALAAHSSLT

Download         Length: 924 bp

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 11106.62 Da        Isoelectric Point: 6.9795

>AT284201 WP_011796139.1 NZ_CP127360:2103682-2103978 [Paracidovorax citrulli]
MTGLKGADALDFHKKLKERNAALRNAELNAAKELADKNGKEPFDLVKLERLCDTSQAGRLVEGTERQAMYEYMYYVEYKN
VGTLQDFARVVTTLASWS

Download         Length: 297 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A1TRP1

References