Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1186232..1186500 | Replicon | chromosome |
| Accession | NZ_CP127316 | ||
| Organism | Escherichia coli strain Ch1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1186270..1186373 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1186232..1186500 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QRM71_RS06055 | 1183389..1184828 | + | 1440 | WP_285978873.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QRM71_RS06060 | 1184946..1185182 | + | 237 | WP_001295499.1 | YebV family protein | - |
| QRM71_RS06065 | 1185287..1185478 | + | 192 | WP_001296140.1 | YebW family protein | - |
| QRM71_RS06070 | 1185479..1186135 | - | 657 | WP_032352406.1 | protein-serine/threonine phosphatase | - |
| - | 1186232..1186500 | + | 269 | - | - | Antitoxin |
| - | 1186270..1186373 | - | 104 | - | - | Toxin |
| QRM71_RS06075 | 1186530..1186871 | - | 342 | WP_073268146.1 | YebY family protein | - |
| QRM71_RS06080 | 1186884..1187755 | - | 872 | Protein_1202 | copper homeostasis membrane protein CopD | - |
| QRM71_RS06085 | 1187759..1188133 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QRM71_RS06090 | 1188272..1188502 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QRM71_RS06095 | 1188604..1189260 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QRM71_RS06100 | 1189284..1189946 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1183383..1193811 | 10428 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T284171 NZ_CP127316:c1186373-1186270 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT284171 NZ_CP127316:1186232-1186500 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
