Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3573467..3573738 | Replicon | chromosome |
| Accession | NZ_CP127306 | ||
| Organism | Escherichia coli strain C51 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3573597..3573700 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3573467..3573738 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QRM70_RS17440 | 3570024..3570686 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QRM70_RS17445 | 3570710..3571365 | - | 656 | Protein_3369 | carbon-nitrogen hydrolase family protein YobB | - |
| QRM70_RS17450 | 3571467..3571697 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QRM70_RS17455 | 3571836..3572210 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| QRM70_RS17460 | 3572214..3573085 | + | 872 | Protein_3372 | copper homeostasis membrane protein CopD | - |
| QRM70_RS17465 | 3573098..3573439 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3573467..3573738 | - | 272 | - | - | Antitoxin |
| - | 3573597..3573700 | + | 104 | - | - | Toxin |
| QRM70_RS17470 | 3573835..3574491 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| QRM70_RS17475 | 3574492..3574683 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QRM70_RS17480 | 3574788..3575024 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QRM70_RS17485 | 3575142..3576581 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T284121 NZ_CP127306:3573597-3573700 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT284121 NZ_CP127306:c3573738-3573467 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
