Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2484994..2485265 | Replicon | chromosome |
| Accession | NZ_CP127297 | ||
| Organism | Escherichia coli strain APEC20/16 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2485124..2485227 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2484994..2485265 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QRM67_RS12145 | 2481549..2482211 | - | 663 | Protein_2354 | exodeoxyribonuclease X | - |
| QRM67_RS12150 | 2482235..2482891 | - | 657 | WP_149488248.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QRM67_RS12155 | 2482993..2483223 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QRM67_RS12160 | 2483362..2483736 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| QRM67_RS12165 | 2483740..2484612 | + | 873 | WP_222699407.1 | copper homeostasis membrane protein CopD | - |
| QRM67_RS12170 | 2484625..2484966 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2484994..2485265 | - | 272 | - | - | Antitoxin |
| - | 2485124..2485227 | + | 104 | - | - | Toxin |
| QRM67_RS12175 | 2485362..2486018 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| QRM67_RS12180 | 2486019..2486210 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QRM67_RS12185 | 2486315..2486551 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QRM67_RS12190 | 2486669..2488108 | - | 1440 | WP_222699406.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T284059 NZ_CP127297:2485124-2485227 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT284059 NZ_CP127297:c2485265-2484994 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
