Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/LOTUS_5_Limkain_b1-PHD
Location 714542..715206 Replicon chromosome
Accession NZ_CP127275
Organism Mycobacterium tuberculosis strain 6721

Toxin (Protein)


Gene name vapC Uniprot ID P96917
Locus tag QRF09_RS03280 Protein ID WP_003403246.1
Coordinates 714799..715206 (+) Length 136 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WF18
Locus tag QRF09_RS03275 Protein ID WP_003403244.1
Coordinates 714542..714802 (+) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QRF09_RS03250 (QRF09_03250) 710719..711783 + 1065 WP_003898532.1 zinc ribbon domain-containing protein -
QRF09_RS03255 (QRF09_03255) 711887..712834 + 948 WP_003403232.1 DUF732 domain-containing protein -
QRF09_RS03260 (QRF09_03260) 712927..713181 + 255 WP_003403235.1 type II toxin-antitoxin system antitoxin VapB30 -
QRF09_RS03265 (QRF09_03265) 713181..713576 + 396 WP_003403236.1 type II toxin-antitoxin system toxin ribonuclease C30 -
QRF09_RS03270 (QRF09_03270) 713670..714410 - 741 WP_003403239.1 TVP38/TMEM64 family protein -
QRF09_RS03275 (QRF09_03275) 714542..714802 + 261 WP_003403244.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
QRF09_RS03280 (QRF09_03280) 714799..715206 + 408 WP_003403246.1 type II toxin-antitoxin system VapC family toxin Toxin
QRF09_RS03285 (QRF09_03285) 715278..716429 - 1152 WP_003403248.1 FIST N-terminal domain-containing protein -
QRF09_RS03290 (QRF09_03290) 716522..718249 - 1728 WP_003901883.1 exodeoxyribonuclease V subunit alpha -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(9-125)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-57)


Sequences

Toxin        


Download         Length: 136 a.a.        Molecular weight: 14376.37 Da        Isoelectric Point: 4.3568

>T283879 WP_003403246.1 NZ_CP127275:714799-715206 [Mycobacterium tuberculosis]
VSTTPAAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVADMETLPVDDDAAR
MWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALDGAASVEIIRV

Download         Length: 408 bp

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9492.84 Da        Isoelectric Point: 11.9108

>AT283879 WP_003403244.1 NZ_CP127275:714542-714802 [Mycobacterium tuberculosis]
MSEVASRELRNDTAGVLRRVRAGEDVTITVSGRPVAVLTPVRPRRRRWLSKTEFLSRLRGAQADPGLRNDLAVLAGDTTE
DLGPIR

Download         Length: 261 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 3DBO

Antitoxin

Source ID Structure
PDB 3DBO
AlphaFold DB A0A7U4BSE4

References