Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-Phd
Location 3423044..3423613 Replicon chromosome
Accession NZ_CP127244
Organism Salinicola sp. JS01

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag QO259_RS15600 Protein ID WP_285950641.1
Coordinates 3423044..3423346 (-) Length 101 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag QO259_RS15605 Protein ID WP_285950642.1
Coordinates 3423359..3423613 (-) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QO259_RS15565 (QO259_15565) 3418170..3419363 - 1194 WP_285950638.1 serine hydrolase -
QO259_RS15585 (QO259_15585) 3420089..3420952 - 864 WP_106419304.1 23S rRNA pseudouridine(2605) synthase RluB -
QO259_RS15590 (QO259_15590) 3420991..3421851 - 861 WP_285950639.1 SMC-Scp complex subunit ScpB -
QO259_RS15595 (QO259_15595) 3421864..3422814 - 951 WP_285950640.1 ScpA family protein -
QO259_RS15600 (QO259_15600) 3423044..3423346 - 303 WP_285950641.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QO259_RS15605 (QO259_15605) 3423359..3423613 - 255 WP_285950642.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
QO259_RS15610 (QO259_15610) 3423727..3424839 - 1113 WP_285950643.1 pyrroloquinoline quinone biosynthesis protein PqqE -
QO259_RS15615 (QO259_15615) 3424836..3425129 - 294 WP_285950644.1 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD -
QO259_RS15620 (QO259_15620) 3425126..3425926 - 801 WP_285950645.1 pyrroloquinoline-quinone synthase PqqC -
QO259_RS15625 (QO259_15625) 3425914..3426807 - 894 WP_233076625.1 pyrroloquinoline quinone biosynthesis protein PqqB -
QO259_RS15630 (QO259_15630) 3426852..3426980 - 129 WP_285950646.1 pyrroloquinoline quinone precursor peptide PqqA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-90)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-71)


Sequences

Toxin        


Download         Length: 101 a.a.        Molecular weight: 11424.22 Da        Isoelectric Point: 5.1989

>T283683 WP_285950641.1 NZ_CP127244:c3423346-3423044 [Salinicola sp. JS01]
VAELLWSQPSLQALDEIAEYIALDNPAAARALVARVLRAVERLVEFPASGRQPPELPGSGYREVVVPPCRVFYRQEGERI
LIVHLMREERALRRYMLDPE

Download         Length: 303 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9663.12 Da        Isoelectric Point: 9.8258

>AT283683 WP_285950642.1 NZ_CP127244:c3423613-3423359 [Salinicola sp. JS01]
MKVELVTNLKRRATQILGELRVSKEPVMITEHGRPSAYLVDIDDYEFMQRRLALLEGLSRGERALQEGRSLDHQAARGSL
SRWL

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References