Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4323991..4324136 | Replicon | chromosome |
| Accession | NZ_CP127229 | ||
| Organism | Klebsiella pneumoniae strain 130119 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4324027..4324129 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4323991..4324136 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QRA14_RS21025 (QRA14_21025) | 4319121..4321181 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| QRA14_RS21030 (QRA14_21030) | 4321185..4321844 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| QRA14_RS21035 (QRA14_21035) | 4321923..4322153 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| QRA14_RS21040 (QRA14_21040) | 4322266..4322640 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| QRA14_RS21045 (QRA14_21045) | 4322644..4323513 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| QRA14_RS21050 (QRA14_21050) | 4323530..4323868 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4323991..4324136 | - | 146 | - | - | Antitoxin |
| - | 4324027..4324129 | + | 103 | - | - | Toxin |
| QRA14_RS21055 (QRA14_21055) | 4324504..4324647 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| QRA14_RS21060 (QRA14_21060) | 4324752..4325720 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| QRA14_RS21065 (QRA14_21065) | 4325877..4326530 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| QRA14_RS21070 (QRA14_21070) | 4326527..4326718 | - | 192 | WP_002911395.1 | YebW family protein | - |
| QRA14_RS21075 (QRA14_21075) | 4326816..4327055 | - | 240 | WP_002911393.1 | YebV family protein | - |
| QRA14_RS21080 (QRA14_21080) | 4327171..4328604 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T283641 NZ_CP127229:4324027-4324129 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT283641 NZ_CP127229:c4324136-4323991 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
