Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | /Xre(antitoxin) |
Location | 5825675..5826834 | Replicon | chromosome |
Accession | NZ_CP127228 | ||
Organism | Pseudomonas tohonis strain KRS022 |
Toxin (Protein)
Gene name | - | Uniprot ID | - |
Locus tag | QQ016_RS26185 | Protein ID | WP_263150781.1 |
Coordinates | 5826082..5826834 (+) | Length | 251 a.a. |
Antitoxin (Protein)
Gene name | - | Uniprot ID | - |
Locus tag | QQ016_RS26180 | Protein ID | WP_111264584.1 |
Coordinates | 5825675..5826046 (+) | Length | 124 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
QQ016_RS26150 | 5821019..5821570 | - | 552 | WP_285961029.1 | GNAT family N-acetyltransferase | - |
QQ016_RS26155 | 5822065..5823663 | + | 1599 | WP_285961030.1 | M28 family metallopeptidase | - |
QQ016_RS26160 | 5823765..5824214 | + | 450 | WP_263150784.1 | S24 family peptidase | - |
QQ016_RS26165 | 5824238..5824423 | - | 186 | WP_228723486.1 | hypothetical protein | - |
QQ016_RS26170 | 5824617..5825018 | - | 402 | WP_263150783.1 | hypothetical protein | - |
QQ016_RS26175 | 5825069..5825551 | - | 483 | WP_263150782.1 | transcription elongation factor GreAB | - |
QQ016_RS26180 | 5825675..5826046 | + | 372 | WP_111264584.1 | DUF2384 domain-containing protein | Antitoxin |
QQ016_RS26185 | 5826082..5826834 | + | 753 | WP_263150781.1 | RES family NAD+ phosphorylase | Toxin |
QQ016_RS26190 | 5826831..5827886 | + | 1056 | WP_285961031.1 | AraC family transcriptional regulator | - |
QQ016_RS26195 | 5828234..5828641 | + | 408 | WP_111264581.1 | SEL1-like repeat protein | - |
QQ016_RS26200 | 5828805..5830169 | + | 1365 | WP_271106364.1 | DNA recombination protein RmuC | - |
QQ016_RS26205 | 5830240..5831124 | - | 885 | WP_285961032.1 | metal-dependent hydrolase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 251 a.a. Molecular weight: 28153.17 Da Isoelectric Point: 7.1064
>T283631 WP_263150781.1 NZ_CP127228:5826082-5826834 [Pseudomonas tohonis]
MDIWTTCQGPQHVGPLRGRLVRLVESQEQVATLQLVDNLAEQALLEELIETSKPPLPRSAEPLHYLLKTPFRYPPLRWGS
RFGTVHEPSLFYAASRLETAMAEGAFYRFVLWSGMAVPPPSGRILSEHSSFEARFQVERGVQLQLPPFDRHAQALADPVD
YRASQALGAAMRAAGVEAFEYRSARCPLQGTNIALFTPEAFTERRPRNLTPWLCETTAEYVAFKHAQAPDTPRLFRMTQF
LIDGHLPQPA
MDIWTTCQGPQHVGPLRGRLVRLVESQEQVATLQLVDNLAEQALLEELIETSKPPLPRSAEPLHYLLKTPFRYPPLRWGS
RFGTVHEPSLFYAASRLETAMAEGAFYRFVLWSGMAVPPPSGRILSEHSSFEARFQVERGVQLQLPPFDRHAQALADPVD
YRASQALGAAMRAAGVEAFEYRSARCPLQGTNIALFTPEAFTERRPRNLTPWLCETTAEYVAFKHAQAPDTPRLFRMTQF
LIDGHLPQPA
Download Length: 753 bp
Antitoxin
Download Length: 124 a.a. Molecular weight: 13570.78 Da Isoelectric Point: 10.2920
>AT283631 WP_111264584.1 NZ_CP127228:5825675-5826046 [Pseudomonas tohonis]
MSALSRPTLDPDAVLAKALLNTREQLGLTQQQLADIVGVHRTAITRWADSGGIRPQSKTGELALLLIRAYRALFALFGGN
LDDMRHFLRTENRHLGAVPLELMGQVQGLVRVVEYLDAIRGKI
MSALSRPTLDPDAVLAKALLNTREQLGLTQQQLADIVGVHRTAITRWADSGGIRPQSKTGELALLLIRAYRALFALFGGN
LDDMRHFLRTENRHLGAVPLELMGQVQGLVRVVEYLDAIRGKI
Download Length: 372 bp
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|
Antitoxin
Source | ID | Structure |
---|